{bio}[intel/2020b] CAMPARI v4.0 by smoors · Pull Request #13152 · easybuilders/easybuild-easyconfigs

smoors · 2021-06-15T08:53:29Z

(created using eb --new-pr)

smoors · 2021-06-15T10:50:57Z

Test report by @smoors
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node354.hydra.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz (skylake_avx512), Python 2.7.5
See https://gist.github.com/50e806991a24e6b36614dc8e2c39f950 for a full test report.

smoors · 2021-06-15T14:57:34Z

@boegelbot: please test @ generoso

boegelbot · 2021-06-15T15:00:10Z

@smoors: Request for testing this PR well received on generoso

PR test command 'EB_PR=13152 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13152 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17454

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2021-06-15T15:00:44Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/b5e010a4c0cfd3a35a0e3f1af1d1aecc for a full test report.

branfosj · 2021-06-18T17:32:41Z

@boegelbot please test @ generoso

boegelbot · 2021-06-18T17:35:14Z

@branfosj: Request for testing this PR well received on generoso

PR test command 'EB_PR=13152 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13152 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17569

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2021-06-18T17:38:13Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/913a77652822fd2edf6c7f3112782d64 for a full test report.

verdurin · 2021-06-21T11:43:20Z

@smoors any ideas here? Error is:

make -C /tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/source/xdr /tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/lib/x86_64/libxdrf.a
      
      
        make[1]: Entering directory '/tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/source/xdr'
      
      
        m4 conf/lnx.m4 libxdrf.m4 &gt; libxdrf.c
      
      
        icc  -c libxdrf.c -o /tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/lib/x86_64/libxdrf.o
      
      
        libxdrf.c(155): catastrophic error: cannot open source file "rpc/rpc.h"
      
      
          #include &lt;rpc/rpc.h&gt;
      
      
                              ^
      
      
        

      
      
        compilation aborted for libxdrf.c (code 4)
      
      
        make[1]: *** [Makefile:53: /tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/lib/x86_64/libxdrf.o] Error 4
      
      
        make[1]: Leaving directory '/tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/source/xdr'
      
      
        make: *** [Makefile:215: /tmp/boegelbot/CAMPARI/4.0/intel-2020b/campari/lib/x86_64/libxdrf.a] Error 2
      
      
        make: *** Waiting for unfinished jobs....

smoors · 2021-06-21T16:19:32Z

@verdurin looks like it needs rpc, which is available in CentOS 7 but not 8.
I've added libtirpc as a dep, which has rpc, but not tested if it will work, so let's just let boegelbot try it and hope for the best :)

smoors · 2021-06-21T16:19:39Z

@boegelbot: please test @ generoso

boegelbot · 2021-06-21T16:20:08Z

@smoors: Request for testing this PR well received on generoso

PR test command 'EB_PR=13152 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13152 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17592

Test results coming soon (I hope)...

Details

- notification for comment with ID 865170653 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-06-21T16:27:30Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/11433d0f2060a525f83bb0de4f2a1544 for a full test report.

smoors · 2021-06-22T07:52:25Z

@boegelbot: please test @ generoso

boegelbot · 2021-06-22T07:55:09Z

@smoors: Request for testing this PR well received on generoso

PR test command 'EB_PR=13152 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13152 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17599

Test results coming soon (I hope)...

Details

- notification for comment with ID 865685377 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-06-22T08:02:41Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/0cbbfd7e7a46f3b4ed500d8d55ffef25 for a full test report.

verdurin

Looks fine.

verdurin · 2021-06-25T17:12:29Z

Going in, thanks @smoors!

adding easyconfigs: CAMPARI-4.0-intel-2020b.eb

11fa22a

smoors added the new label Jun 15, 2021

add libtirpc dep

d9a57a9

add libtirpc link flags

39105a7

verdurin approved these changes Jun 25, 2021

View reviewed changes

verdurin added this to the next release (4.4.1) milestone Jun 25, 2021

verdurin merged commit 1cb16e9 into easybuilders:develop Jun 25, 2021

smoors deleted the 20210615105324_new_pr_CAMPARI40 branch January 21, 2026 09:23

Conversation

smoors commented Jun 15, 2021

Uh oh!

smoors commented Jun 15, 2021

Uh oh!

smoors commented Jun 15, 2021

Uh oh!

boegelbot commented Jun 15, 2021

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boegelbot commented Jun 15, 2021

Uh oh!

branfosj commented Jun 18, 2021

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boegelbot commented Jun 18, 2021

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boegelbot commented Jun 18, 2021

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verdurin commented Jun 21, 2021

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smoors commented Jun 21, 2021

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smoors commented Jun 21, 2021

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boegelbot commented Jun 21, 2021

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boegelbot commented Jun 21, 2021

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smoors commented Jun 22, 2021

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boegelbot commented Jun 22, 2021

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boegelbot commented Jun 22, 2021

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verdurin commented Jun 25, 2021

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