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add VBZ compress capability to nanopolish 0.13.3 (for fast5 files)#13536

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branfosj merged 4 commits intoeasybuilders:developfrom
hajgato:nanop
Aug 2, 2021
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add VBZ compress capability to nanopolish 0.13.3 (for fast5 files)#13536
branfosj merged 4 commits intoeasybuilders:developfrom
hajgato:nanop

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@hajgato hajgato commented Aug 2, 2021

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branfosj
branfosj requested changes Aug 2, 2021
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Comment thread easybuild/easyconfigs/v/vbz_compression/vbz_compression-1.0.1-gompi-2020b.eb Outdated
Comment thread easybuild/easyconfigs/v/vbz_compression/vbz_compression-1.0.1-gompi-2020b.eb
Comment thread easybuild/easyconfigs/v/vbz_compression/vbz_compression-1.0.1-gompi-2020b.eb Outdated
@branfosj branfosj added this to the 4.x milestone Aug 2, 2021
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branfosj commented Aug 2, 2021

@boegelbot please test @ generoso

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boegelbot commented Aug 2, 2021

@branfosj: Request for testing this PR well received on generoso

PR test command 'EB_PR=13536 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13536 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 17856

Test results coming soon (I hope)...

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branfosj commented Aug 2, 2021

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0211u08b.bear.cluster - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.8.5
See https://gist.github.com/ac699dfb1cc4b2f58406d8b83878951b for a full test report.

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branfosj commented Aug 2, 2021

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.3, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/f4f736baac397ca3f97b1729a4fed0c8 for a full test report.

boegel
boegel requested changes Aug 2, 2021
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Comment thread easybuild/easyconfigs/v/VBZ_Compression/VBZ_Compression-1.0.1-gompi-2020b.eb Outdated
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boegelbot commented Aug 2, 2021

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
generoso-c1-s-4 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/9bff2f5a3d268ffd63fc438785be047d for a full test report.

boegel
boegel reviewed Aug 2, 2021
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Comment thread easybuild/easyconfigs/v/VBZ-Compression/VBZ-Compression-1.0.1-gompi-2020b.eb
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boegel commented Aug 2, 2021

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3537.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/5f83606923ebad648243c368b18779fd for a full test report.

@boegel boegel changed the title {bin}[foss/2020b] nanopore 0.13.3 add VBZ compress capability (for fast5 files) nanopore 0.13.3 add VBZ compress capability to nanopore 0.13.3 (for fast5 files) Aug 2, 2021
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boegel commented Aug 2, 2021

@branfosj Looks good to go?

@branfosj branfosj modified the milestones: 4.x, next release (4.4.2?) Aug 2, 2021
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branfosj commented Aug 2, 2021

Going in, thanks @hajgato!

@branfosj branfosj merged commit 9dd3791 into easybuilders:develop Aug 2, 2021
@boegel boegel changed the title nanopore 0.13.3 add VBZ compress capability to nanopore 0.13.3 (for fast5 files) nanopolish 0.13.3 add VBZ compress capability to nanopore 0.13.3 (for fast5 files) Aug 3, 2021
@boegel boegel changed the title nanopolish 0.13.3 add VBZ compress capability to nanopore 0.13.3 (for fast5 files) add VBZ compress capability to nanopolish 0.13.3 (for fast5 files) Aug 3, 2021
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@branfosj branfosj branfosj approved these changes

@boegel boegel boegel approved these changes

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