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I also added a comment explaining how to install the Kraken2 databases. The postinstall commands building the databases are disabled by default because they require more than 100GB of storage.
Test report by @lexming SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node300.hydra.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/bdbffd9123fcada6d6b6f5bbaecb8354 for a full test report.
Test report by @boegelbot SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cnx1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/5ec6a29ec34915b3e5aeadc1cf2fc598 for a full test report.
boegel
changed the title
patch rsync_from_ncbi.pl in Kraken2 v2.1.2
patch rsync_from_ncbi.pl in Kraken2 v2.1.2 to allow syncing with NCBI servers over HTPS
Oct 27, 2021
boegel
changed the title
patch rsync_from_ncbi.pl in Kraken2 v2.1.2 to allow syncing with NCBI servers over HTPS
patch rsync_from_ncbi.pl in Kraken2 v2.1.2 to allow syncing with NCBI servers over HTTPS
Oct 27, 2021
Test report by @boegel SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2635.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/4f412cd28e73a40f17f6b9aa627774d9 for a full test report.
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(created using
eb --new-pr)Fixes issue DerrickWood/kraken2#508
I also added a comment explaining how to install the Kraken2 databases. The postinstall commands building the databases are disabled by default because they require more than 100GB of storage.