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{bio}[foss/2021b] PPanGGOLiN v1.1.136 + dependencies#14449

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boegel merged 10 commits intoeasybuilders:developfrom
deniskristak:20211126181647_new_pr_ARAGORN1241
Nov 28, 2021
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{bio}[foss/2021b] PPanGGOLiN v1.1.136 + dependencies#14449
boegel merged 10 commits intoeasybuilders:developfrom
deniskristak:20211126181647_new_pr_ARAGORN1241

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@deniskristak deniskristak commented Nov 26, 2021

adding easyconfigs: ARAGORN-1.2.41-foss-2021b.eb, gmpy2-2.1.0rc1-GCC-11.2.0.eb, Infernal-1.1.4-foss-2021b.eb, MAFFT-7.490-GCC-11.2.0-with-extensions.eb, MMseqs2-13-45111-gompi-2021b.eb, networkx-2.6.3-foss-2021b.eb, plotly.py-5.4.0-GCCcore-11.2.0.eb, PPanGGOLiN-1.1.136-foss-2021b.eb, prodigal-2.6.3-GCCcore-11.2.0.eb, genoPlotR-0.8.11-foss-2020b.eb, rpy2-3.4.5-foss-2021b.eb and patches: PPanGGOLiN-1.1.136_new_compiler_compatibility.patch, rpy2-3.4.5_disable_gui_tests.patch

deniskristak and others added 3 commits November 26, 2021 19:16
adding easyconfigs: ARAGORN-1.2.41-foss-2021b.eb, gmpy2-2.1.0rc1-GCC-…
fed639b 
…11.2.0.eb, Infernal-1.1.4-foss-2021b.eb, MAFFT-7.490-GCC-11.2.0-with-extensions.eb, MMseqs2-13-45111-gompi-2021b.eb, networkx-2.6.3-foss-2021b.eb, plotly.py-5.4.0-GCCcore-11.2.0.eb, PPanGGOLiN-1.1.136-foss-2021b.eb, prodigal-2.6.3-GCCcore-11.2.0.eb, genoPlotR-0.8.11-foss-2020b.eb, rpy2-3.4.5-foss-2021b.eb and patches: PPanGGOLiN-1.1.136_new_compiler_compatibility.patch, rpy2-3.4.5_disable_gui_tests.patch
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Delete genoPlotR-0.8.11-foss-2020b.eb
c73c51f 
deleting genoplotR since it's going to be included in R presumably
code style
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deniskristak commented Nov 26, 2021 •
edited by boegel
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this needs to be merged first: #14450

@easybuilders easybuilders deleted a comment from boegelbot Nov 27, 2021
@boegel boegel changed the title PPanGGOLiN on foss 2021b {bio}[foss/2021b] PPanGGOLiN v1.1.136 + dependencies Nov 27, 2021
@easybuilders easybuilders deleted a comment from boegelbot Nov 27, 2021
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boegel commented Nov 27, 2021

@boegelbot please test @ generoso
CORE_CNT=16

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boegelbot commented Nov 27, 2021

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=14449 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14449 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 7378

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegel commented Nov 27, 2021

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in total)
node3510.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/d549837b7323441ebd31554063f81664 for a full test report.

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boegel commented Nov 27, 2021

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in total)
node2631.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/ffe9359a462d9d3cd2492028f1590b2c for a full test report.

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boegelbot commented Nov 27, 2021

Test report by @boegelbot
SUCCESS
Build succeeded for 11 out of 11 (10 easyconfigs in total)
cnx2 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/0033d40bcec58ecf21a28808e4badc97 for a full test report.

@boegel boegel added this to the next release (4.5.1?) milestone Nov 28, 2021
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boegel approved these changes Nov 28, 2021
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lgtm

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boegel commented Nov 28, 2021

Going in, thanks @deniskristak!

@boegel boegel merged commit ff86c0d into easybuilders:develop Nov 28, 2021
@boegel boegel mentioned this pull request Nov 28, 2021
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