{bio}[GCCcore/10.3.0] ANIcalculator v1.0 by bedroge · Pull Request #14478 · easybuilders/easybuild-easyconfigs

bedroge · 2021-12-01T10:15:16Z

(created using eb --new-pr)

bedroge · 2021-12-01T10:15:50Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.8.10
See https://gist.github.com/5d3fefd58662b6ca436dcdcfd40d670b for a full test report.

bedroge · 2021-12-01T10:16:30Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/3e259ce04f412c51710db7c79a22b62f for a full test report.

bedroge · 2021-12-01T10:16:43Z

@boegelbot please test @ generoso

boegelbot · 2021-12-01T10:20:14Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=14478 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14478 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7412

Test results coming soon (I hope)...

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boegelbot · 2021-12-01T10:20:42Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/54d7bbcd22843324ad742fd1a6684101 for a full test report.

bedroge · 2021-12-01T10:37:25Z

ANIcalculator: error while loading shared libraries: libnsl.so.1: cannot open shared object file: No such file or directory

Hmm, on my CentOS 7 and Ubuntu 20.04 systems, this library is provided by the (g)libc package. Apparently, this is not the case on EL8 (?).

boegelbot · 2021-12-01T10:53:29Z

@bedroge: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/1525256286
Output from first failing test suite run:

(skipped conflicts test)
======================================================================
FAIL: test__parse_easyconfig_ANIcalculator-1.0-GCCcore-10.3.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig ANIcalculator-1.0-GCCcore-10.3.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1374, in innertest
    template_easyconfig_test(self, spec_path)
  File "test/easyconfigs/easyconfigs.py", line 1212, in template_easyconfig_test
    "binutils or GCC is a build dep in %s: %s" % (spec, dep_names))
AssertionError: binutils or GCC is a build dep in /home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/a/ANIcalculator/ANIcalculator-1.0-GCCcore-10.3.0.eb: ['Perl']

----------------------------------------------------------------------
Ran 13774 tests in 528.828s

FAILED (failures=1)
(skipped dep graph test)
Merge base for develop and HEAD: 9f0d70e52fb7749cdd80b2673adf5aaa6fc055be
Merge base for develop and HEAD: 9f0d70e52fb7749cdd80b2673adf5aaa6fc055be

List of added easyconfig files in this PR:
	ANIcalculator-1.0-GCCcore-10.3.0.eb
ERROR: Not all tests were successful

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Please talk to my owner @boegel if you notice you me acting stupid),
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bedroge · 2021-12-02T08:01:59Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.8.10
See https://gist.github.com/1a8e3dbf0a9379c218e6f570d04b7703 for a full test report.

bedroge · 2021-12-02T08:02:49Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/3861c5347ab58776cb10648e45923bcd for a full test report.

migueldiascosta

lgtm

migueldiascosta · 2021-12-02T08:31:22Z

Going in, thanks @bedroge!

migueldiascosta · 2021-12-02T08:31:54Z

@boegelbot please test @ generoso

boegelbot · 2021-12-02T08:35:10Z

@migueldiascosta: Request for testing this PR well received on login1

PR test command 'EB_PR=14478 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14478 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7418

Test results coming soon (I hope)...

Details

- notification for comment with ID 984403539 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-12-02T08:35:54Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/c069527568a76959e82c887aad57a934 for a full test report.

migueldiascosta · 2021-12-02T13:06:09Z

@boegelbot please test @ generoso

boegelbot · 2021-12-02T13:10:09Z

@migueldiascosta: Request for testing this PR well received on login1

PR test command 'EB_PR=14478 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14478 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7422

Test results coming soon (I hope)...

Details

- notification for comment with ID 984610796 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-12-02T13:10:40Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/6b9c354b32407603e0fa2b05616b87d7 for a full test report.

migueldiascosta · 2021-12-02T13:18:21Z

for future reference, the difference in the test reports from generoso (rocky 8) is that for the last one the libnsl os package was installed, which provides the legacy libnsl.so.1, no longer provided by glibc

adding easyconfigs: ANIcalculator-1.0-GCCcore-10.3.0.eb

58bb0b5

bedroge added the new label Dec 1, 2021

bedroge added this to the 4.x milestone Dec 1, 2021

bedroge mentioned this pull request Dec 1, 2021

{bio}[foss/2021a] dRep v3.0.0 w/ Python 3.9.5 #14479

Merged

8 tasks

bedroge added 2 commits December 1, 2021 12:51

add binutils as build dependency

ea42dcd

add comment about linux distro having to provide libnsl.so.1

8f7a198

migueldiascosta reviewed Dec 2, 2021

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Comment thread easybuild/easyconfigs/a/ANIcalculator/ANIcalculator-1.0-GCCcore-10.3.0.eb Outdated

migueldiascosta modified the milestones: 4.x, next release (4.5.1?) Dec 2, 2021

remove comment about binutils

435ca83

migueldiascosta approved these changes Dec 2, 2021

View reviewed changes

migueldiascosta merged commit b6642f2 into easybuilders:develop Dec 2, 2021

bedroge deleted the 20211201111511_new_pr_ANIcalculator10 branch December 2, 2021 08:32

migueldiascosta mentioned this pull request Dec 2, 2021

clarify comments in ANIcalculator easyconfig #14486

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bedroge commented Dec 1, 2021

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