add yaml-cpp dependency + fix source URL for Trilinos 12.12.1 with foss/2019b by branfosj · Pull Request #14547 · easybuilders/easybuild-easyconfigs

branfosj · 2021-12-13T18:40:15Z

(created using eb --new-pr)

This also switches the download source, as per the discussion in #14066

branfosj · 2021-12-13T21:41:52Z

Test report by @branfosj
SUCCESS
Build succeeded for 5 out of 5 (2 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.3, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/346c1e5d862b64f2cc42dcd77e54a90d for a full test report.

dithwick · 2021-12-14T09:58:35Z

Those download locations for Trilinos 12.12.1 work any more. When I built it recently, I borrowed the source from the Debian libtrilinos-triutils12 source package (provides trilinos_12.12.1.orig.tar.bz2). See issue #14066 (apparently I opened it and forgot about it).

lexming · 2021-12-18T00:21:33Z

@boegelbot: please test @ generoso

boegelbot · 2021-12-18T00:25:09Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7516

Test results coming soon (I hope)...

Details

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lexming

LGTM

branfosj · 2021-12-18T13:41:07Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.5, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/6dd3774ac03f7f1ed4bd8b018e23f6c4 for a full test report.

lexming · 2021-12-18T23:12:59Z

@boegelbot: please test @ generoso

boegelbot · 2021-12-18T23:15:08Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7529

Test results coming soon (I hope)...

Details

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boegelbot · 2021-12-18T23:17:04Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
cns2 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/eaa636da89f8675067919c0683d7ab82 for a full test report.

lexming · 2021-12-18T23:28:04Z

There is a leftover lock in generoso...

lexming · 2021-12-19T22:37:43Z

@boegelbot: please test @ generoso

boegelbot · 2021-12-19T22:40:10Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7534

Test results coming soon (I hope)...

Details

- notification for comment with ID 997474118 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

verdurin · 2022-01-01T16:04:18Z

Test report by @verdurin
FAILED
Build succeeded for 25 out of 26 (2 easyconfigs in total)
centos7.lan - Linux centos linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/156ced56478a23de3ed2bb514c47fae5 for a full test report.

verdurin · 2022-01-02T22:46:52Z

Test report by @verdurin
FAILED
Build succeeded for 0 out of 1 (2 easyconfigs in total)
centos7.lan - Linux centos linux 7.9.2009, x86_64, Intel Core Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/7c7bcdf2f1a66447e929d26b36d43945 for a full test report.

branfosj · 2022-01-03T12:59:32Z

g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[2]: *** [packages/muelu/doc/Tutorial/src/CMakeFiles/MueLu_Challenge_XML.dir/Challenge.cpp.o] Error 1
make[2]: Leaving directory `/dev/shm/Trilinos/12.12.1/foss-2019b-Python-3.7.4/obj'
make[1]: *** [packages/muelu/doc/Tutorial/src/CMakeFiles/MueLu_Challenge_XML.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....

Out of memory?

From the Trilinos easyconfig:

# too parallel is too slow because of memory requirements (results in
# swapping), and may cause build/tests to fail building with 20 cores
# seems to require about 100GB of memory (peak usage)
maxparallel = 10

verdurin · 2022-01-03T13:16:29Z

Yes, looks that way.

lexming · 2022-01-17T22:04:00Z

@boegelbot: please test @ generoso
EB_ARGS="--ignore-locks"
CORE_CNT=24

boegel · 2022-01-18T09:25:35Z

@boegelbot: please test @ generoso
EB_ARGS="--ignore-locks"
CORE_CNT=16

boegelbot · 2022-01-18T09:30:36Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS="--ignore-locks" /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7884

Test results coming soon (I hope)...

Details

- notification for comment with ID 1015221707 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-01-18T12:34:00Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
cnx1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/6402e79f051907007ce734560398145f for a full test report.

boegel · 2022-01-18T13:26:29Z

@boegelbot: please test @ generoso
EB_ARGS="--parallel 8"
CORE_CNT=16

boegelbot · 2022-01-18T13:35:13Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS="--parallel 8" /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7892

Test results coming soon (I hope)...

Details

- notification for comment with ID 1015410966 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2022-01-18T20:33:04Z

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3533.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/76e3dc959293b1ecb5fcbc9fb0900201 for a full test report.

boegel · 2022-01-18T20:36:17Z

The requested test on generoso actually worked, but uploading of the test report failed due to urllib.error.HTTPError: HTTP Error 403: Forbidden.... 🤦

boegel · 2022-01-18T20:36:26Z

@boegelbot: please test @ generoso
EB_ARGS="--parallel 8"
CORE_CNT=16

boegelbot · 2022-01-18T20:45:13Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=14547 EB_ARGS="--parallel 8" /opt/software/slurm/bin/sbatch --job-name test_PR_14547 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7899

Test results coming soon (I hope)...

Details

- notification for comment with ID 1015813449 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2022-01-18T23:39:52Z

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node2620.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/a6cd21a19a92788649e6fa4030746edc for a full test report.

boegel · 2022-01-19T07:37:58Z

2nd test on generoso also worked fine, but again uploading the test report failed with a 403 error. I've opened an issue on this at easybuilders/easybuild-framework#3934, no need to block this PR over that since there's successful test reports from other systems.

boegel · 2022-01-19T07:38:08Z

Going in, thanks @branfosj!

add yaml-cpp to Trilinos

dfbf794

branfosj added new enhancement labels Dec 13, 2021

dithwick mentioned this pull request Dec 15, 2021

Source url no longer working for Trilinos-12.12.1-foss-2019b-Python-3.7.4.eb #14066

Closed

update source location

9816700

branfosj linked an issue Dec 15, 2021 that may be closed by this pull request

Source url no longer working for Trilinos-12.12.1-foss-2019b-Python-3.7.4.eb #14066

Closed

lexming reviewed Dec 17, 2021

View reviewed changes

Comment thread easybuild/easyconfigs/t/Trilinos/Trilinos-12.12.1-foss-2019b-Python-3.7.4.eb

Comment thread easybuild/easyconfigs/t/Trilinos/Trilinos-12.12.1-foss-2019b-Python-3.7.4.eb

lexming approved these changes Dec 18, 2021

View reviewed changes

lexming added this to the next release (4.5.2?) milestone Dec 18, 2021

boegel changed the title ~~add yaml-cpp to Trilinos~~ add yaml-cpp dependency to Trilinos 12.12.1 with foss/2019b Jan 18, 2022

boegel merged commit 6b69849 into easybuilders:develop Jan 19, 2022

branfosj deleted the 20211213184009_new_pr_Trilinos12121 branch January 19, 2022 07:43

boegel added the bug fix label Jan 23, 2022

boegel changed the title ~~add yaml-cpp dependency to Trilinos 12.12.1 with foss/2019b~~ add yaml-cpp dependency + fix source URL for Trilinos 12.12.1 with foss/2019b Jan 23, 2022

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