enable running of tests for MEME with gompi/2021b by boegel · Pull Request #15191 · easybuilders/easybuild-easyconfigs

boegel · 2022-03-26T08:30:59Z

(created using eb --new-pr)
requires:

add Sys::Info::Driver::Unknown + Sys::Info::Driver::Linux + Unix::Processors extensions to Perl v5.34.0 #15190

boegel · 2022-03-26T08:49:10Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3164.skitty.os - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/dc2d1cfc618526ca1839bbce3d90660c for a full test report.

branfosj · 2022-03-26T11:59:09Z

@boegelbot please test @ generoso

boegelbot · 2022-03-26T12:00:10Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=15191 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_15191 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 8318

Test results coming soon (I hope)...

Details

- notification for comment with ID 1079671050 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-03-26T12:08:54Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/e1fdeaeaae52f496bac2c7c2cc7011d9 for a full test report.

branfosj · 2022-03-26T12:27:50Z

Test report by @branfosj
SUCCESS
Build succeeded for 3 out of 3 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.5, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/1dd45855ef14f150e9e330677a797d02 for a full test report.

branfosj · 2022-03-26T12:36:21Z

Operating system identified as: 'Linux'. Native driver can not be loaded: Error loading Sys::Info::Driver::Linux::Device::CPU: Can't locate Sys/Info/Driver/Linux/Device/CPU.pm in @INC (you may need to install the Sys::Info::Driver::Linux::Device::CPU module) (@INC contains: /dev/shm/build-branfosj-admin/branfosj-admin-up/MEME/5.4.1/gompi-2021b-Python-2.7.18/meme-5.4.1/scripts /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-Compile/1.63-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-Compile/1.63-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-LibXML/2.0207-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-LibXML/2.0207-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/5.34.0) at /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Sys/Info/Base.pm line 45.
 at /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Sys/Info/Device/CPU.pm line 9.
. Falling back to compatibility mode

While it is not a required Perl module, should we be adding this in #15190 as well?

boegel · 2022-03-28T07:35:36Z

@boegelbot please test @ generoso

boegelbot · 2022-03-28T07:35:52Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=15191 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_15191 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 8325

Test results coming soon (I hope)...

Details

- notification for comment with ID 1080300789 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2022-03-28T07:36:00Z

Operating system identified as: 'Linux'. Native driver can not be loaded: Error loading Sys::Info::Driver::Linux::Device::CPU: Can't locate Sys/Info/Driver/Linux/Device/CPU.pm in @INC (you may need to install the Sys::Info::Driver::Linux::Device::CPU module) (@INC contains: /dev/shm/build-branfosj-admin/branfosj-admin-up/MEME/5.4.1/gompi-2021b-Python-2.7.18/meme-5.4.1/scripts /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-Compile/1.63-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-Compile/1.63-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-LibXML/2.0207-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XML-LibXML/2.0207-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0 /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/5.34.0/x86_64-linux-thread-multi /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/5.34.0) at /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Sys/Info/Base.pm line 45.
 at /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/Perl/5.34.0-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Sys/Info/Device/CPU.pm line 9.
. Falling back to compatibility mode

While it is not a required Perl module, should we be adding this in #15190 as well?

Done in e4db0bf in #15190

boegelbot · 2022-03-28T07:44:13Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/935a7e21006cf090f6716976c8549187 for a full test report.

branfosj · 2022-03-28T08:56:00Z

Operating system identified as: 'Linux'. Native driver can not be loaded: Error loading Sys::Info::Driver::Linux::Device::CPU: Can't locate Unix/Processors.pm in @INC (you may need to install the Unix::Proc
essors module)

See #15190 (comment)

And I've tested and with that all is there.

branfosj

lgtm

branfosj · 2022-03-28T09:35:41Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux RHEL 8.5, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/13ccb7bde9c7d19d2ff22da3d6db1aad for a full test report.

branfosj · 2022-03-28T09:35:59Z

Going in, thanks @boegel!

boegel · 2022-03-28T09:53:49Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3112.skitty.os - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/4106d14c1194266382b68721e7a3e48c for a full test report.

boegel · 2022-03-28T16:05:28Z

Note: also requires #15199 to avoid trouble in certain contexts...

enable running of tests for MEME with gompi/2021b

8f3afe6

boegel mentioned this pull request Mar 26, 2022

{bio}[gompi/2021b] MEME v5.4.1 w/ Python 2.7.18 #15169

Merged

boegel added the enhancement label Mar 26, 2022

boegel added this to the 4.x milestone Mar 26, 2022

branfosj mentioned this pull request Mar 26, 2022

add Sys::Info::Driver::Unknown + Sys::Info::Driver::Linux + Unix::Processors extensions to Perl v5.34.0 #15190

Merged

branfosj modified the milestones: 4.x, next release (4.5.4) Mar 28, 2022

branfosj approved these changes Mar 28, 2022

View reviewed changes

branfosj merged commit 533e9cc into easybuilders:develop Mar 28, 2022

boegel deleted the 20220326093052_new_pr_MEME541 branch March 28, 2022 09:46

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