replace HDF5 v1.13.1 with v1.12.2 as dependency, since we shouldn't use odd minor versions of HDF5 which are not stable releases by Micket · Pull Request #16153 · easybuilders/easybuild-easyconfigs

Micket · 2022-08-29T11:30:06Z

(created using eb --new-pr)
Odd releases are just RCs apparently.

Micket · 2022-08-29T11:58:10Z

I also dropped the dap4 tests for netCDF as they were previously failing for me while trying to access online resources. Even if that site is back, i don't think we want to rely on tests that access internet as I imagine it causes annoying failures for those building on internet-less nodes.

Micket · 2022-08-29T12:06:38Z

This is so inconveniently big, I'll do test reports in batches

Micket · 2022-08-29T12:18:53Z

Test report by @Micket
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
alvis-c1 - Linux Rocky Linux 8.5, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/a63e51d61d2f289cb1ecfd2e3e01feeb for a full test report.

Micket · 2022-08-29T18:11:17Z

@boegel asked me to merge the test issue with netCDF first, so #16158

I'll rebase this PR once it's merged.

…asyconfigs into 20220829133002_new_pr_h5py370

Micket · 2022-08-30T11:47:08Z

Test report by @Micket
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
alvis-c1 - Linux Rocky Linux 8.5, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/78244561608cc83014401b1281037a65 for a full test report.

Micket · 2022-08-30T13:25:45Z

Test report by @Micket
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
alvis-c1 - Linux Rocky Linux 8.5, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/a3f2ac63488c6442e06dba0f75583f60 for a full test report.

Micket · 2022-08-30T16:11:15Z

Test report by @Micket
SUCCESS
Build succeeded for 6 out of 6 (2 easyconfigs in total)
alvis-c1 - Linux Rocky Linux 8.5, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/b8116014979ef017786a74bd00b857ec for a full test report.

Micket · 2022-08-30T20:43:14Z

Test report by @Micket
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
alvis-c1 - Linux Rocky Linux 8.5, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/e58f956f4b1016fddc615335c4d2c338 for a full test report.

edit: I think this fail was because i managed to have built some dependency with Icelake arch in my test tree and this was a skylake node i tested from. Ugh.

…as dependency

boegel · 2022-08-31T19:27:03Z

@boegelbot please test @ generoso
CORE_CNT=16

boegel

lgtm

boegelbot · 2022-08-31T19:30:10Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=16153 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16153 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9096

Test results coming soon (I hope)...

Details

- notification for comment with ID 1233335706 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2022-08-31T21:01:16Z

Test report by @branfosj
SUCCESS
Build succeeded for 16 out of 16 (9 easyconfigs in total)
bear-pg0105u36b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/02ab685f4f346ef73c4475ec830b8671 for a full test report.

boegelbot · 2022-09-01T04:23:24Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (9 easyconfigs in total)
cnx1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/6828632f9d8949a083e5c995ce6b185e for a full test report.

boegel · 2022-09-01T05:11:01Z

Test report by @boegel
SUCCESS
Build succeeded for 9 out of 9 (9 easyconfigs in total)
node3100.skitty.os - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/c2cbfd9f774654bb8f69a8e7792b488e for a full test report.

boegel · 2022-09-01T06:50:52Z

Going in, thanks @Micket!

jfgrimm · 2022-09-28T15:38:53Z

for reference: https://www.hdfgroup.org/2021/12/hdf5-1-13-0-introducing-experimental-releases/

smoors · 2022-12-22T19:04:11Z

@boegelbot please test @ jsc-zen2

boegelbot · 2022-12-22T19:07:07Z

@smoors: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16153 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_16153 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 1960

Test results coming soon (I hope)...

Details

- notification for comment with ID 1363247366 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-12-23T01:47:44Z

Test report by @boegelbot
FAILED
Build succeeded for 8 out of 10 (9 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/22170949e47985462f0035c0699e6f86 for a full test report.

Drop HDF5 from 1.13.1 to 1.12.2

74d7f7f

Micket added the update label Aug 29, 2022

Micket added 2 commits August 29, 2022 13:37

Fix checksum, switch additional deps

d56105d

Add comment in eb files explaining versioning

f5c82b0

Micket added this to the next release (4.6.1?) milestone Aug 29, 2022

Drop dap4 tests for netCDF

6d01073

Micket added 2 commits August 30, 2022 13:19

Include fix for netCDF-4.9.0

68684b4

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

92868dc

…asyconfigs into 20220829133002_new_pr_h5py370

Micket mentioned this pull request Aug 30, 2022

{data}[iimpi/2022a] netCDF-Fortran v4.6.0, netCDF v4.9.0 #16009

Merged

Micket added change bug fix labels Aug 30, 2022

add test to make sure that we don't use an odd minor version of HDF5 …

0730693

…as dependency

boegel changed the title ~~Drop HDF5 from 1.13.1 to 1.12.2~~ replace HDF5 v1.13.1 with v1.12.1 as dependency, since we shouldn't use odd minor versions of HDF5 which are not stable releases Aug 31, 2022

boegel approved these changes Aug 31, 2022

View reviewed changes

boegel merged commit f07968e into easybuilders:develop Sep 1, 2022

jfgrimm changed the title ~~replace HDF5 v1.13.1 with v1.12.1 as dependency, since we shouldn't use odd minor versions of HDF5 which are not stable releases~~ replace HDF5 v1.13.1 with v1.12.2 as dependency, since we shouldn't use odd minor versions of HDF5 which are not stable releases Sep 1, 2022

maxim-masterov mentioned this pull request Sep 1, 2022

{math,vis}[GCCcore/11.3.0] OpenFOAM v2206, ParaView v5.10.1, CGAL v4.14.3, ... w/ Python 3.10.4 #15938

Merged

kosl pushed a commit to kosl/easybuild-easyconfigs that referenced this pull request Sep 1, 2022

Downgrade HDF5 1.12.2, as proposed by PR easybuilders#16153

e9ccc4f

This was referenced Nov 4, 2022

broken source link for hdf5-1.13.1 #16553

Closed

add hdf5-1.13.3 #16554

Closed

boegel mentioned this pull request Nov 16, 2022

HDF5 1.13.1 is broken as the source is gone #16653

Closed

boegel mentioned this pull request Jan 3, 2023

{data}[foss/2022a] HDF5 v1.13.1 #17016

Closed

Micket deleted the 20220829133002_new_pr_h5py370 branch April 21, 2023 09:20

boegel mentioned this pull request Jul 5, 2023

HDF5-1.13.1-iimpi-2022a.eb download failure easybuilders/easybuild#875

Closed

boegel mentioned this pull request Jun 25, 2025

{chem}[iomkl/2023a] autoCAS v2.3.1, OpenMolcas v25.02, QCMaquis v3.1.4, ... w/ serial #23201

Merged

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