{lib}[foss/2021a] DeepLabCut v2.2.0.6 w/ Python 3.9.5 by sassy-crick · Pull Request #16391 · easybuilders/easybuild-easyconfigs

sassy-crick · 2022-10-12T13:12:59Z

(created using eb --new-pr)

Requires:

jfgrimm · 2022-10-13T10:42:32Z

+    ('CUDA', '11.3.1', '', True),
+    ('cuDNN', '8.2.1.32', '-CUDA-%(cudaver)s', True),


Suggested change

('CUDA', '11.3.1', '', True),

('cuDNN', '8.2.1.32', '-CUDA-%(cudaver)s', True),

('CUDA', '11.3.1', '', SYSTEM),

('cuDNN', '8.2.1.32', '-CUDA-%(cudaver)s', SYSTEM),

Thanks. That slipped through. I have changed that.

@sassy-crick your latest commit has reverted back to True

…asyconfigs into 20221012141255_new_pr_DeepLabCut2206

jfgrimm · 2022-10-14T14:58:36Z

+        'sources': ['%(name)s-%(version)s.zip'],
+        'checksums': ['4f2a4d39e4ea601b9ab42b2db08b5918a9538c168cff1c6895ae26646f3d73b1'],
+    }),
+    ('pandas', '1.3.3', {


we bundle pandas in SciPy-bundle, is there a need for a version newer than 1.2.4?

Probably no need, most likely I did not know and I was thus looking for the latest version of it. I have removed it and it is still building. Thanks for pointing that out.

casparvl · 2022-10-17T00:47:36Z

Test report by @casparvl
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
gcn2 - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 515.43.04, Python 3.6.8
See https://gist.github.com/e36fe7607c8a9a0e3d74642be011e7c0 for a full test report.

casparvl · 2022-10-17T00:57:10Z

Test report by @casparvl
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
software2.lisa.surfsara.nl - Linux debian 10.13, x86_64, Intel(R) Xeon(R) Bronze 3104 CPU @ 1.70GHz, 4 x NVIDIA NVIDIA TITAN V, 470.103.01, Python 3.7.3
See https://gist.github.com/5d7d379e53a7628a58748e17b8b49f61 for a full test report.

casparvl · 2022-10-17T13:52:52Z

@boegelbot please test @ generoso

boegelbot · 2022-10-17T13:55:09Z

@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=16391 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16391 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9301

Test results coming soon (I hope)...

Details

- notification for comment with ID 1280898231 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

casparvl · 2022-10-17T13:59:46Z

Test report by @casparvl
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
software2.lisa.surfsara.nl - Linux debian 10.13, x86_64, Intel(R) Xeon(R) Bronze 3104 CPU @ 1.70GHz, 4 x NVIDIA NVIDIA TITAN V, 470.103.01, Python 3.7.3
See https://gist.github.com/39fcce90b63911270131bbeb014085f7 for a full test report.

boegelbot · 2022-10-17T14:00:18Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/c9adb5fed1c6053119a90ac6987e7b20 for a full test report.

casparvl · 2022-10-17T14:02:02Z

Test report by @casparvl
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
gcn2.local.snellius.surf.nl - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 515.43.04, Python 3.6.8
See https://gist.github.com/9c4671f9f308b0c35c5096b8d4d8626e for a full test report.

casparvl · 2022-10-17T14:56:46Z

From the pip sanity check:

== 2022-10-17 16:01:53,979 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/RHEL8/2022/software/EasyBuild/4.6.1/lib/python3.6/site-packages/easybuild/base/exceptions.py:124 in __init__): `pip check` failed:
deeplabcut 2.2.0.6 requires moviepy, which is not installed.
deeplabcut 2.2.0.6 has requirement scikit-image<=0.18.1,>=0.17, but you have scikit-image 0.18.3.

sassy-crick · 2022-10-24T11:40:56Z

From the pip sanity check:

== 2022-10-17 16:01:53,979 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/RHEL8/2022/software/EasyBuild/4.6.1/lib/python3.6/site-packages/easybuild/base/exceptions.py:124 in __init__): `pip check` failed:
deeplabcut 2.2.0.6 requires moviepy, which is not installed.
deeplabcut 2.2.0.6 has requirement scikit-image<=0.18.1,>=0.17, but you have scikit-image 0.18.3.

Thanks for finding this, entirely my wrong as I did not rebuild after I added the sanity_pip_check = True. I have added the missing MoviePy and also downgraded scikit-image. To avoid (hopefully) any conflicts, I have installed scikit-image as an extension, rather than as a module. If that is the wrong way forward, please let me know. I was hoping that extensions might be the better way here.
I have also updated PR #16281 regarding this.

jfgrimm · 2022-10-24T11:48:42Z

@sassy-crick take a look at: DeepLabCut/DeepLabCut#1791, DeepLabCut/DeepLabCut#1800

we can probably get away with just using the scikit-image version we have in an easyconfig, and loosening the upper version bound in requirements.txt

… newer version of scikit-image

sassy-crick · 2022-10-24T13:36:42Z

@sassy-crick take a look at: DeepLabCut/DeepLabCut#1791, DeepLabCut/DeepLabCut#1800

we can probably get away with just using the scikit-image version we have in an easyconfig, and loosening the upper version bound in requirements.txt

Done. I am always a bit cautious to changing upper bounds but it builds ok.

I have also reverted the True back to System, which happened accidentally.

…asyconfigs into 20221012141255_new_pr_DeepLabCut2206

casparvl · 2022-11-01T14:33:42Z

Test report by @casparvl
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
gcn1.local.snellius.surf.nl - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 515.43.04, Python 3.6.8
See https://gist.github.com/a4115ec75e873ccafd53bc72c63f472a for a full test report.

casparvl

Looks good to me!

casparvl · 2022-11-01T14:56:41Z

Test report by @casparvl
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
software2.lisa.surfsara.nl - Linux debian 10.13, x86_64, Intel(R) Xeon(R) Bronze 3104 CPU @ 1.70GHz, 4 x NVIDIA NVIDIA TITAN V, 470.103.01, Python 3.7.3
See https://gist.github.com/c26d821f54b769ce6bab582bce553b5f for a full test report.

casparvl · 2022-11-01T15:02:52Z

Going in, thanks @sassy-crick!

adding easyconfigs: DeepLabCut-2.2.0.6-foss-2021a-CUDA-11.3.1.eb

1937a12

jfgrimm reviewed Oct 13, 2022

View reviewed changes

sassy and others added 2 commits October 13, 2022 16:40

True changed to SYSTEM

fce73ff

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

5d97c3c

…asyconfigs into 20221012141255_new_pr_DeepLabCut2206

jfgrimm reviewed Oct 14, 2022

View reviewed changes

sassy added 4 commits October 17, 2022 09:48

pandas removed as already in SciPy-bundle

bf2fc71

Duplicated PyYAML removed

2808078

pip_sanity_check added

6506f62

download_dep removed as PythonBundle being used

3b822c4

MoviePi added, scikit-image downgraded

09b501d

sassy added 2 commits October 24, 2022 14:32

True reverted to system, scikit-image readded and setup.py patched to…

9102b2e

… newer version of scikit-image

patchfile added

6edee6b

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

b8b9d97

…asyconfigs into 20221012141255_new_pr_DeepLabCut2206

casparvl approved these changes Nov 1, 2022

View reviewed changes

casparvl added the new label Nov 1, 2022

casparvl added this to the next release (4.6.3?) milestone Nov 1, 2022

casparvl merged commit f307351 into easybuilders:develop Nov 1, 2022

sassy-crick deleted the 20221012141255_new_pr_DeepLabCut2206 branch November 1, 2022 15:32

		('CUDA', '11.3.1', '', True),
		('cuDNN', '8.2.1.32', '-CUDA-%(cudaver)s', True),

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sassy-crick commented Oct 12, 2022 •

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