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add DO.db, GOSemSim, DOSE, enrichplot, and clusterProfiler extensions to Bioconductor 3.15#17126

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boegel merged 1 commit intoeasybuilders:developfrom
verdurin:20230117095247_new_pr_R-bundle-Bioconductor315
Jan 17, 2023
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add DO.db, GOSemSim, DOSE, enrichplot, and clusterProfiler extensions to Bioconductor 3.15#17126
boegel merged 1 commit intoeasybuilders:developfrom
verdurin:20230117095247_new_pr_R-bundle-Bioconductor315

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@verdurin verdurin commented Jan 17, 2023 •
edited by boegel
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@verdurin verdurin added this to the 4.x milestone Jan 17, 2023
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boegel commented Jan 17, 2023

@boegelbot please test @ generoso
EB_ARGS="--skip"

@boegel boegel changed the title Add DO.db, GOSemSim, DOSE, enrichplot, and clusterProfiler extensions to Bioconductor 3.15 add DO.db, GOSemSim, DOSE, enrichplot, and clusterProfiler extensions to Bioconductor 3.15 Jan 17, 2023
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boegelbot commented Jan 17, 2023

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17126 EB_ARGS="--skip" EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17126 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10007

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jan 17, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns3 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/8009839a13a3ccff32013f4a283cb328 for a full test report.

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boegel commented Jan 17, 2023

@boegelbot please test @ jsc-zen2
EB_ARGS="--skip"

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boegel commented Jan 17, 2023

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3155.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/ae803da3c9f8913b1da69dcc23a81413 for a full test report.

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boegelbot commented Jan 17, 2023

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17126 EB_ARGS="--skip" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17126 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2054

Test results coming soon (I hope)...

Details

- notification for comment with ID 1385826971 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jan 17, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/b2dc10df82eeba39ab7bc6c271441020 for a full test report.

@boegel boegel modified the milestones: 4.x, next release (4.7.1?) Jan 17, 2023
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boegel approved these changes Jan 17, 2023
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lgtm

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boegel commented Jan 17, 2023

Going in, thanks @verdurin!

@boegel boegel merged commit 05c4288 into easybuilders:develop Jan 17, 2023
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