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add patch to make ncbi-vdb 3.0.0 compatible with HDF5 1.12.2#17140

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verdurin merged 1 commit intoeasybuilders:developfrom
boegel:ncbi-vdb-3.0.0_HDF5-1.12
Jan 20, 2023
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add patch to make ncbi-vdb 3.0.0 compatible with HDF5 1.12.2#17140
verdurin merged 1 commit intoeasybuilders:developfrom
boegel:ncbi-vdb-3.0.0_HDF5-1.12

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@boegel boegel commented Jan 17, 2023

follow-up for #16376, with improvements that were implemented as a part of #16908

@boegel boegel added the bug fix label Jan 17, 2023
@boegel boegel added this to the next release (4.7.1?) milestone Jan 17, 2023
@boegel boegel mentioned this pull request Jan 17, 2023
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boegel commented Jan 17, 2023

@boegelbot please test @ generoso

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boegelbot commented Jan 17, 2023

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17140 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17140 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10016

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jan 17, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/1e7cba0f11f29f4d28368e20dcc73609 for a full test report.

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boegel commented Jan 17, 2023

@boegelbot please test @ jsc-zen2

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boegelbot commented Jan 17, 2023

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17140 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17140 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2066

Test results coming soon (I hope)...

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- notification for comment with ID 1386111604 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jan 17, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2g1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/96a94b73aeb91bca1134999cf30fde52 for a full test report.

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boegel commented Jan 17, 2023

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3155.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/226162c9b0f0d6ff1f8914a035454f4f for a full test report.

verdurin
verdurin requested changes Jan 18, 2023
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Comment thread easybuild/easyconfigs/n/ncbi-vdb/ncbi-vdb-3.0.0-gompi-2022a.eb
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verdurin commented Jan 20, 2023

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/5461d057b46987998ccfa7f9002b97a2 for a full test report.

verdurin
verdurin approved these changes Jan 20, 2023
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Looks fine.

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verdurin commented Jan 20, 2023

Going in, thanks @boegel!

@verdurin verdurin merged commit ebbeadf into easybuilders:develop Jan 20, 2023
@boegel boegel deleted the ncbi-vdb-3.0.0_HDF5-1.12 branch January 20, 2023 21:53
This was referenced Jun 29, 2023
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