{base}[foss/2022a] astro-tulips v1.0.1 w/ Python 3.10.4 by garadar · Pull Request #17263 · easybuilders/easybuild-easyconfigs

garadar · 2023-02-06T16:30:45Z

(created using eb --new-pr)

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

boegelbot · 2023-02-07T09:29:51Z

@garadar: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/4111994327
Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 883, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>20(1[89]|[2-9][0-9])[ab]).*\.eb$' easyconfigs:

found 2 variants of 'FFmpeg' dependency in easyconfigs using '2022a' toolchain generation
* version: 4.4.2; versionsuffix:  as dep for set(['ParaView-5.10.1-foss-2022a-mpi.eb', 'torchsampler-0.1.2-foss-2022a-CUDA-11.7.0.eb', 'PyTorch-Lightning-1.8.4-foss-2022a.eb', 'PyTorch-1.12.1-foss-2022a-CUDA-11.7.0.eb', 'OpenCV-4.6.0-foss-2022a-contrib.eb', 'PyTorch-Lightning-1.7.7-foss-2022a-CUDA-11.7.0.eb', 'OmegaFold-1.1.0-foss-2022a-CUDA-11.7.0.eb', 'SignalP-6.0g-foss-2022a-fast.eb', 'rising-0.2.2-foss-2022a-CUDA-11.7.0.eb', 'Xmipp-3.22.07-Helios-foss-2022a.eb', 'imgaug-0.4.0-foss-2022a-CUDA-11.7.0.eb', 'PyTorch-Lightning-1.8.4-foss-2022a-CUDA-11.7.0.eb', 'Xmipp-3.22.07-Helios-foss-2022a-CUDA-11.7.0.eb', 'PyTorch-1.12.1-foss-2022a.eb', 'OpenFOAM-10-foss-2022a.eb', 'Parcels-2.4.0-foss-2022a.eb', 'captum-0.5.0-foss-2022a-CUDA-11.7.0.eb', 'SignalP-6.0g-foss-2022a-fast-CUDA-11.7.0.eb', 'lagrangian-filtering-0.8.3-foss-2022a.eb', 'VMD-1.9.4a57-foss-2022a.eb', 'ASAP-2.1-foss-2022a.eb', 'imgaug-0.4.0-foss-2022a.eb', 'torchsampler-0.1.2-foss-2022a.eb', 'captum-0.5.0-foss-2022a.eb', 'PyTorch-1.12.0-foss-2022a-CUDA-11.7.0.eb', 'torchvision-0.13.1-foss-2022a.eb', 'dorado-0.1.1-foss-2022a-CUDA-11.7.0.eb', 'MONAI-1.0.1-foss-2022a-CUDA-11.7.0.eb', 'PyTorch-1.12.0-foss-2022a.eb', 'PyTorch-Lightning-1.7.7-foss-2022a.eb', 'OVITO-3.7.11-gompi-2022a-basic.eb', 'OpenFOAM-v2206-foss-2022a.eb', 'Albumentations-1.3.0-foss-2022a-CUDA-11.7.0.eb', 'OpenCV-4.6.0-foss-2022a-CUDA-11.7.0-contrib.eb', 'torchvision-0.13.1-foss-2022a-CUDA-11.7.0.eb', 'pysteps-1.7.1-foss-2022a.eb', 'rising-0.2.2-foss-2022a.eb', 'MONAI-1.0.1-foss-2022a.eb', 'RLCard-1.0.9-foss-2022a.eb', 'Albumentations-1.3.0-foss-2022a.eb', 'fastai-2.7.10-foss-2022a.eb', 'fastai-2.7.10-foss-2022a-CUDA-11.7.0.eb'])
* version: 5.0.1; versionsuffix:  as dep for set(['astro-tulips-1.0.1-foss-2022a.eb'])


======================================================================
FAIL: test_pr_python_packages (test.easyconfigs.easyconfigs.EasyConfigTest)
Several checks for easyconfigs that install (bundles of) Python packages.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1077, in test_pr_python_packages
    self.fail('\n'.join(failing_checks))
AssertionError: sanity_pip_check should be enabled in astro-tulips-1.0.1-foss-2022a.eb

----------------------------------------------------------------------
Ran 16360 tests in 695.838s

FAILED (failures=2)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

boegelbot · 2023-02-08T17:29:49Z

@garadar: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/4126293892
Output from first failing test suite run:

FAIL: test_pr_python_packages (test.easyconfigs.easyconfigs.EasyConfigTest)
Several checks for easyconfigs that install (bundles of) Python packages.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1077, in test_pr_python_packages
    self.fail('\n'.join(failing_checks))
AssertionError: sanity_pip_check should be enabled in astro-tulips-1.0.1-foss-2022a.eb

----------------------------------------------------------------------
Ran 16367 tests in 642.744s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

bedroge · 2023-02-20T19:47:46Z

@boegelbot please test @ generoso

boegelbot · 2023-02-20T19:50:10Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=17263 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17263 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10284

Test results coming soon (I hope)...

Details

- notification for comment with ID 1437483621 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-20T19:52:00Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/2676540a2f7afb3e3dd5ae55ddc314c7 for a full test report.

bedroge · 2023-02-20T20:09:03Z

@garadar the installation is failing due to:

cmasher 1.6.3 requires e13tools, which is not installed.
ipywidgets 8.0.4 has requirement widgetsnbextension~=4.0, but you have widgetsnbextension 3.5.1.

bedroge · 2023-02-21T14:20:33Z

@boegelbot please test @ generoso

boegelbot · 2023-02-21T14:25:09Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=17263 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17263 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10329

Test results coming soon (I hope)...

Details

- notification for comment with ID 1438574604 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-21T14:28:01Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/6fb761b4efd734cb3be3966c8f23be19 for a full test report.

bedroge · 2023-02-21T14:34:41Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 22.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.10.6
See https://gist.github.com/014cacdf12305ba7e813db36afd84d2f for a full test report.

bedroge · 2023-02-21T14:35:56Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-02-21T14:37:08Z

@bedroge: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17263 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17263 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2226

Test results coming soon (I hope)...

Details

- notification for comment with ID 1438596900 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-21T14:39:23Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/099e48bcaebfea751392abd416f43cbf for a full test report.

bedroge

lgtm

bedroge

lgtm

bedroge · 2023-02-21T14:44:39Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 22.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.10.6
See https://gist.github.com/b70885999860caa5f194472550db3872 for a full test report.

bedroge · 2023-02-21T14:59:52Z

Going in, thanks @garadar!

alberta added 2 commits February 6, 2023 17:30

adding easyconfigs: astro-tulips-1.0.1-foss-2022a.eb

ee738a8

add checksum

eb8234c

bedroge added the new label Feb 7, 2023

bedroge requested changes Feb 7, 2023

View reviewed changes

garadar and others added 2 commits February 7, 2023 09:36

Update easybuild/easyconfigs/a/astro-tulips/astro-tulips-1.0.1-foss-2…

35fbd85

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

Update easybuild/easyconfigs/a/astro-tulips/astro-tulips-1.0.1-foss-2…

4800032

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

alberta and others added 3 commits February 8, 2023 16:59

edit ffmpeg version

fda6356

Update easybuild/easyconfigs/a/astro-tulips/astro-tulips-1.0.1-foss-2…

3251aa0

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

correct file

e6fb4e5

alberta and others added 2 commits February 13, 2023 11:23

correct file

21ef50a

Update easybuild/easyconfigs/a/astro-tulips/astro-tulips-1.0.1-foss-2…

2281e5c

…022a.eb Co-authored-by: Bob Dröge <[email protected]>

garadar requested a review from bedroge February 20, 2023 14:41

add required soft

fd2c5d1

bedroge previously approved these changes Feb 21, 2023

View reviewed changes

remove comment at top

2ee8294

bedroge dismissed their stale review via 2ee8294 February 21, 2023 14:42

bedroge approved these changes Feb 21, 2023

View reviewed changes

bedroge added this to the next release (4.7.1?) milestone Feb 21, 2023

bedroge merged commit da0126c into easybuilders:develop Feb 21, 2023

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