{bio}[foss/2022a] vConTACT2 v0.11.3 w/ Python 3.10.4 by boegel · Pull Request #17372 · easybuilders/easybuild-easyconfigs

boegel · 2023-02-20T16:44:36Z

(created using eb --new-pr)

boegel · 2023-02-20T16:45:08Z

@boegelbot please test @ generoso

boegelbot · 2023-02-20T16:50:11Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17372 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17372 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10282

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2023-02-20T16:50:35Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3127.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/b9459a176e15e0874c61f6da777d3ccc for a full test report.

boegelbot · 2023-02-20T16:54:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/96c009e4d03879e124667f9d66b7c3a9 for a full test report.

boegel · 2023-02-20T16:55:37Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-02-20T16:57:09Z

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17372 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17372 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2221

Test results coming soon (I hope)...

Details

- notification for comment with ID 1437311915 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-20T17:00:19Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/0bab9641a41bf0d2d8229c595318f0cf for a full test report.

bedroge · 2023-02-20T22:26:25Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 22.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.10.6
See https://gist.github.com/71f0fcb7cb5fdb6bdb2f740cac232b59 for a full test report.

bedroge · 2023-02-20T22:29:12Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/4e5c8f156955f820a1dc08a954d38977 for a full test report.

boegel · 2023-02-23T17:04:08Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3125.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/33cf1dab16dbd3d2205f71c8e616104f for a full test report.

bedroge · 2023-02-24T09:26:52Z

@boegelbot please test @ generoso

bedroge · 2023-02-24T09:28:30Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 22.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.10.6
See https://gist.github.com/0691a95444e76ee74adf8b66231c95a3 for a full test report.

boegelbot · 2023-02-24T09:30:10Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=17372 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17372 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10349

Test results coming soon (I hope)...

Details

- notification for comment with ID 1443322582 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

bedroge · 2023-02-24T09:32:09Z

Test report by @bedroge
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/8621327eb266584812e78eba79701002 for a full test report.

boegelbot · 2023-02-24T09:34:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/76925c4ac21f3a78c52fdbc26d56d95b for a full test report.

bedroge · 2023-02-24T09:34:36Z

== 2023-02-24 10:29:58,434 run.py:234 INFO running cmd: just --help 
== 2023-02-24 10:30:01,670 easyblock.py:3450 WARNING Sanity check: sanity check command just --help exited with code 1 (output: Traceback (most recent call last):
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/bin/just", line 5, in <module>
    from clusterone.clusterone_cli import main
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/clusterone/clusterone_cli.py", line 10, in <module>
    from clusterone import commands
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/clusterone/commands/__init__.py", line 6, in <module>
    from . import get
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/clusterone/commands/get/__init__.py", line 3, in <module>
    from . import events
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/clusterone/commands/get/events/__init__.py", line 1, in <module>
    from .cmd import command
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/clusterone/commands/get/events/cmd.py", line 12, in <module>
    LOCAL_TIMEZONE = get_localzone()
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/tzlocal/unix.py", line 203, in get_localzone
    _cache_tz = _get_localzone()
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/tzlocal/unix.py", line 185, in _get_localzone
    utils.assert_tz_offset(tz)
  File "/data/f115261/easybuildinstall/software/vConTACT2/0.11.3-foss-2022a/lib/python3.10/site-packages/tzlocal/utils.py", line 63, in assert_tz_offset
    raise ValueError(msg)
ValueError: Timezone offset does not match system offset: 0 != 3600. Please, check your config files.
)

I guess it may be because I'm running this in a container, let me check...

bedroge · 2023-02-24T10:10:30Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux CentOS Linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/6a76bc34cababc75bf7ac26411007900 for a full test report.

bedroge · 2023-02-24T10:10:44Z

This was indeed some timezone issue with my build container, solved by setting $TZ.

bedroge · 2023-02-24T10:10:53Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-02-24T10:17:10Z

@bedroge: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17372 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17372 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2247

Test results coming soon (I hope)...

Details

- notification for comment with ID 1443402433 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-24T10:20:21Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/3052beea41c18cec71dc819d1c82524b for a full test report.

bedroge

lgtm

bedroge · 2023-02-24T10:21:26Z

Going in, thanks @boegel!

adding easyconfigs: vConTACT2-0.11.3-foss-2022a.eb

ecc9d4e

boegel added the new label Feb 20, 2023

boegel added this to the 4.x milestone Feb 20, 2023

bedroge reviewed Feb 21, 2023

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Comment thread easybuild/easyconfigs/v/vConTACT2/vConTACT2-0.11.3-foss-2022a.eb

bedroge reviewed Feb 21, 2023

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Comment thread easybuild/easyconfigs/v/vConTACT2/vConTACT2-0.11.3-foss-2022a.eb

stick to click-log 0.1.8 for vConTACT2 + add sanity check commands

3ff5fcd

bedroge approved these changes Feb 24, 2023

View reviewed changes

bedroge merged commit 6e689d6 into easybuilders:develop Feb 24, 2023

bedroge modified the milestones: 4.x, next release (4.7.1?) Feb 24, 2023

boegel deleted the 20230220174431_new_pr_vConTACT20113 branch February 25, 2023 09:11

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