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{bio}[foss/2022a] CASPR v20200730, MAGeCK v0.5.9.4, vispr v0.4.14 w/ Python 3.10.4#17606

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deniskristak:20230327185103_new_pr_CASPR20200730
Apr 10, 2023
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{bio}[foss/2022a] CASPR v20200730, MAGeCK v0.5.9.4, vispr v0.4.14 w/ Python 3.10.4#17606
boegel merged 4 commits intoeasybuilders:developfrom
deniskristak:20230327185103_new_pr_CASPR20200730

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@deniskristak deniskristak commented Mar 27, 2023

adding CASPR easyconfig + deps
vscentrum/vsc-software-stack#116

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deniskristak commented Mar 27, 2023

@boegelbot please test @ generoso

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boegelbot commented Mar 27, 2023

@deniskristak: Request for testing this PR well received on login1

PR test command 'EB_PR=17606 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17606 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10547

Test results coming soon (I hope)...

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boegelbot commented Mar 27, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/c7fed04f7502342981713157fff12f2c for a full test report.

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verdurin commented Apr 10, 2023

Test report by @verdurin
SUCCESS
Build succeeded for 9 out of 9 (4 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/efa99a27f706cf70502e335a191dd1f1 for a full test report.

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boegel commented Apr 10, 2023

@boegelbot please test @ jsc-zen2

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boegel requested changes Apr 10, 2023
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Comment thread easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-GCC-11.3.0.eb

dependencies = [
('GDGraph', '1.56'),
('Perl', '5.34.1'),
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@deniskristak It looks like you're accidentally changing an existing easyconfig here?

@boegel boegel added this to the 4.x milestone Apr 10, 2023
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boegel requested changes Apr 10, 2023
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Comment thread easybuild/easyconfigs/v/vispr/vispr-0.4.14-foss-2022a.eb Outdated
toolchain = {'name': 'foss', 'version': '2022a'}

sources = ['%(name)s-%(version)s.tar.gz']
patches = ['vispr_fix_pandas_version_change.patch']
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@deniskristak Please rename the patch file to also include the vispr version to which it applies: vispr-0.4.14_fix_pandas_version_change.patch

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boegelbot commented Apr 10, 2023

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17606 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17606 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2483

Test results coming soon (I hope)...

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boegelbot commented Apr 10, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/6b4647b06a5ec8ec49a7ca15c722b9b1 for a full test report.

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boegel commented Apr 10, 2023

@boegelbot please test @ generoso

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boegelbot commented Apr 10, 2023

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17606 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17606 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10624

Test results coming soon (I hope)...

Details

- notification for comment with ID 1502095930 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Apr 10, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/ba83057076968a2e02e1a900d8aaa762 for a full test report.

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boegel commented Apr 10, 2023

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3102.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/boegel/70c10d700e9f409e5ad1cd5ef737f6e5 for a full test report.

@boegel boegel modified the milestones: 4.x, next release (4.7.2?) Apr 10, 2023
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boegel commented Apr 10, 2023

Going in, thanks @deniskristak!

@boegel boegel merged commit f81f24f into easybuilders:develop Apr 10, 2023
@boegel boegel changed the title {bio}[foss/2022a] CASPR v20200730 w/ Python 3.10.4 {bio}[foss/2022a] CASPR v20200730, MAGeCK v0.5.9.4, vispr v0.4.14 w/ Python 3.10.4 May 26, 2023
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