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{bio}[foss/2021b] CodingQuarry v2.0#17682

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verdurin merged 3 commits intoeasybuilders:developfrom
boegel:20230410180350_new_pr_CodingQuarry20
Apr 11, 2023
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{bio}[foss/2021b] CodingQuarry v2.0#17682
verdurin merged 3 commits intoeasybuilders:developfrom
boegel:20230410180350_new_pr_CodingQuarry20

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@boegel boegel commented Apr 10, 2023

(created using eb --new-pr)

@boegel boegel added the new label Apr 10, 2023
@boegel boegel added this to the 4.x milestone Apr 10, 2023
@boegel boegel mentioned this pull request Apr 10, 2023
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boegel commented Apr 10, 2023

@boegelbot please test @ jsc-zen2

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boegelbot commented Apr 10, 2023

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17682 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17682 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2477

Test results coming soon (I hope)...

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it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Apr 10, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2g1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/6f0146256a7d96149dafe598ca6be1a6 for a full test report.

branfosj
branfosj previously requested changes Apr 10, 2023
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Comment thread easybuild/easyconfigs/c/CodingQuarry/CodingQuarry-2.0-GCC-11.2.0.eb Outdated
boegel added 2 commits April 10, 2023 21:22
@boegel
add Python dependency for CodingQuarry 2.0 + add patch to make includ…
7f91101 
…ed Python script compatible with Python 3.x + add sanity check command to test it
@boegel
add Biopython dependency for CodingQuarry 2.0 + bump toolchain to fos…
7a983cc 
…s/2021b + enhance patch to make fastaTranslate.py script compatible with Python 3.x
@boegel boegel changed the title {bio}[GCC/11.2.0] CodingQuarry v2.0 {bio}[foss/2021b] CodingQuarry v2.0 Apr 10, 2023
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boegel commented Apr 10, 2023

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3102.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/boegel/d08ad8c3db4f7b572e904d15576c1c95 for a full test report.

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boegel commented Apr 10, 2023

@boegelbot please test @ generoso

@easybuilders easybuilders deleted a comment from boegelbot Apr 10, 2023
@easybuilders easybuilders deleted a comment from boegelbot Apr 10, 2023
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boegelbot commented Apr 10, 2023

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17682 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17682 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10627

Test results coming soon (I hope)...

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- notification for comment with ID 1502225129 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Apr 10, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/7020e210044244e80ded3049ceb31d50 for a full test report.

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verdurin commented Apr 11, 2023

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/4b8a5ee33739fb47a620823c4a775d6c for a full test report.

verdurin
verdurin approved these changes Apr 11, 2023
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Looks fine.

@verdurin verdurin dismissed branfosj’s stale review April 11, 2023 13:14

Changes added

@verdurin verdurin modified the milestones: 4.x, next release (4.7.2?) Apr 11, 2023
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verdurin commented Apr 11, 2023

Going in, thanks @boegel!

@verdurin verdurin merged commit 2d48880 into easybuilders:develop Apr 11, 2023
@boegel boegel deleted the 20230410180350_new_pr_CodingQuarry20 branch April 11, 2023 14:17
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