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{bio}[foss/2022a] Trinotate v4.0.1, PyBioLib v1.1.988, MMseqs2 v14-7e284, Transdecoder v5.5.0 ... w/ Python 3.10.4#18124

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verdurin merged 3 commits intoeasybuilders:developfrom
lexming:20230616095001_new_pr_eggnog-mapper219
Jun 16, 2023
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{bio}[foss/2022a] Trinotate v4.0.1, PyBioLib v1.1.988, MMseqs2 v14-7e284, Transdecoder v5.5.0 ... w/ Python 3.10.4#18124
verdurin merged 3 commits intoeasybuilders:developfrom
lexming:20230616095001_new_pr_eggnog-mapper219

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@lexming lexming commented Jun 16, 2023 •
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(created using eb --new-pr)

Trinotate + dependencies

New software:

  • PyBioLib
  • Trinotate

Updates:

  • eggnog-mapper
  • Infernal
  • MMseqs2
  • TransDecoder

@lexming
adding easyconfigs: eggnog-mapper-2.1.9-foss-2022a.eb, Infernal-1.1.4…
379853b 
…-foss-2022a.eb, MMseqs2-14-7e284-gompi-2022a.eb, PyBioLib-1.1.988-GCCcore-11.3.0.eb, TransDecoder-5.5.0-GCC-11.3.0.eb, Trinotate-4.0.1-foss-2022a.eb
@lexming lexming mentioned this pull request Jun 16, 2023
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@lexming lexming changed the title {bio}[foss/2022a] eggnog-mapper v2.1.9, Infernal v1.1.4, MMseqs2 v14-7e284, ... w/ Python 3.10.4 {bio}[foss/2022a] Trinotate v4.0.1, PyBioLib v1.1.988, MMseqs2 v14-7e284, Transdecoder v5.5.0 ... w/ Python 3.10.4 Jun 16, 2023
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lexming commented Jun 16, 2023

@boegelbot: please test @ generoso

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boegelbot commented Jun 16, 2023

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=18124 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_18124 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 11005

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jun 16, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/a201d189e73d82d88c347df0d09f001d for a full test report.

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verdurin commented Jun 16, 2023

Test report by @verdurin
SUCCESS
Build succeeded for 20 out of 20 (6 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/6e5e3b8ec18109e7df5c0beb97c7bd20 for a full test report.

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verdurin commented Jun 16, 2023

@boegelbot please test @ jsc-zen2

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boegelbot commented Jun 16, 2023

@verdurin: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=18124 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_18124 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 2787

Test results coming soon (I hope)...

Details

- notification for comment with ID 1595134780 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Jun 16, 2023

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/bca6ad48daaccba3f346cdeb60228058 for a full test report.

@verdurin verdurin added this to the next release (4.7.3?) milestone Jun 16, 2023
verdurin
verdurin approved these changes Jun 16, 2023
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Looks fine.

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verdurin commented Jun 16, 2023

Going in, thanks @lexming!

@verdurin verdurin merged commit 4a2d542 into easybuilders:develop Jun 16, 2023
@lexming lexming deleted the 20230616095001_new_pr_eggnog-mapper219 branch June 19, 2023 08:53
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