{bio}[GCC/12.2.0] Mashtree v1.4.6, Mash v2.3, QuickTree v2.5 by verdurin · Pull Request #19019 · easybuilders/easybuild-easyconfigs

verdurin · 2023-10-16T08:40:27Z

(created using eb --new-pr)

….eb, QuickTree-2.5-GCC-12.2.0.eb

verdurin · 2023-10-16T12:53:31Z

@boegelbot please test @ generoso

boegelbot · 2023-10-16T12:55:05Z

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=19019 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19019 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 11942

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-10-16T12:57:42Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/7ba9c4b7830c608bcbc8a367d8c6d1c3 for a full test report.

verdurin · 2023-10-16T16:20:37Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-10-16T16:25:08Z

@verdurin: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=19019 EB_ARGS= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_19019 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 3558

Test results coming soon (I hope)...

Details

- notification for comment with ID 1764837281 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-10-16T16:26:27Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/5801fae61090c26c5c50d79a85606a7e for a full test report.

migueldiascosta · 2023-10-18T06:13:14Z

@verdurin looks like the missing wget on jsc-zen2 revealed that Mashtree is fecthing https://github.com/lskatz/ROSS (https://github.com/lskatz/mashtree/blob/v1.4.0/Makefile.PL#L25, although this has since been removed, lskatz/mashtree@9e31a5d ...)

verdurin · 2023-10-24T21:31:51Z

@boegelbot please test @ jsc-zen2

verdurin · 2023-10-24T21:32:41Z

Test report by @verdurin
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/c76bbd4cf21f6775538e7548ca6a0028 for a full test report.

boegelbot · 2023-10-24T21:35:10Z

@verdurin: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=19019 EB_ARGS= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_19019 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 3632

Test results coming soon (I hope)...

Details

- notification for comment with ID 1778073968 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-10-24T21:36:34Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/4cd9100992c08cfefbbd3fd423d60882 for a full test report.

verdurin · 2023-10-24T21:39:43Z

@boegelbot please test @ generoso

boegelbot · 2023-10-24T21:40:04Z

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=19019 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19019 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12048

Test results coming soon (I hope)...

Details

- notification for comment with ID 1778084522 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-10-24T21:42:53Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2bda4d8f3eda88850503af103bf24b37 for a full test report.

migueldiascosta

lgtm

migueldiascosta · 2023-10-25T00:58:21Z

Going in, thanks @verdurin!

adding easyconfigs: Mashtree-1.4.0-GCC-12.2.0.eb, Mash-2.3-GCC-12.2.0…

d9f06fb

….eb, QuickTree-2.5-GCC-12.2.0.eb

verdurin added new update labels Oct 16, 2023

verdurin and others added 2 commits October 24, 2023 21:29

Update to release with fix for problem with the ROSS dependency

9641a55

Remove obsolete Mashtree easyconfig

6d4941f

verdurin changed the title ~~{bio}[GCC/12.2.0] Mashtree v1.4.0, Mash v2.3, QuickTree v2.5~~ {bio}[GCC/12.2.0] Mashtree v1.4.6, Mash v2.3, QuickTree v2.5 Oct 24, 2023

migueldiascosta approved these changes Oct 25, 2023

View reviewed changes

migueldiascosta added this to the next release (4.8.2?) milestone Oct 25, 2023

migueldiascosta merged commit e93e0e4 into easybuilders:develop Oct 25, 2023

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verdurin commented Oct 16, 2023

Uh oh!

verdurin commented Oct 16, 2023

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boegelbot commented Oct 16, 2023

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boegelbot commented Oct 16, 2023

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verdurin commented Oct 16, 2023

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migueldiascosta commented Oct 18, 2023

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verdurin commented Oct 24, 2023

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verdurin commented Oct 24, 2023

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boegelbot commented Oct 24, 2023

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boegelbot commented Oct 24, 2023

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verdurin commented Oct 24, 2023

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boegelbot commented Oct 24, 2023

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boegelbot commented Oct 24, 2023

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migueldiascosta commented Oct 25, 2023

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