{bio}[foss/2022a] SemiBin v2.0.2 w/ CUDA 11.7.0 by boegel · Pull Request #19767 · easybuilders/easybuild-easyconfigs

boegel · 2024-01-31T19:17:22Z

(created using eb --new-pr)
requires:

{bio}[foss/2022a] SemiBin v2.0.2, FragGeneScan v1.31 #19766

boegel · 2024-01-31T19:22:31Z

@boegelbot please test @ generoso

boegelbot · 2024-01-31T19:25:10Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=19767 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19767 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12789

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-01-31T19:27:46Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/80ecbc14cf6467e7d3d8edfc22c441a1 for a full test report.

boegel · 2024-01-31T19:33:06Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3309.joltik.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), 1 x NVIDIA Tesla V100-SXM2-32GB, 535.154.05, Python 3.6.8
See https://gist.github.com/boegel/cf9a390cded98a7c4714ec887496049b for a full test report.

boegelbot · 2024-01-31T20:25:49Z

@boegel: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/7731249456
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 330, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: FragGeneScan/1.31-foss-2022a (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 317, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: FragGeneScan/1.31-foss-2022a (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 919, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: FragGeneScan/1.31-foss-2022a (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 19062 tests in 918.014s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

…asyconfigs into 20240131201717_new_pr_SemiBin202

bedroge · 2024-02-05T10:22:37Z

@boegelbot please test @ generoso

boegelbot · 2024-02-05T10:25:09Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=19767 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19767 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12834

Test results coming soon (I hope)...

Details

- notification for comment with ID 1926653199 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-02-05T10:28:06Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/d7a4251abf8b690ed1493dfb1c4c506f for a full test report.

bedroge · 2024-02-05T15:53:51Z

Test report by @bedroge
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
gpu1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6150 CPU @ 2.70GHz (skylake_avx512), 1 x NVIDIA GRID V100D-32Q, 525.105.17, Python 3.6.8
See https://gist.github.com/bedroge/39877b7a424ef1edefe7b4d9f206c3f6 for a full test report.

bedroge

lgtm

bedroge · 2024-02-05T21:14:50Z

Going in, thanks @boegel!

adding easyconfigs: SemiBin-2.0.2-foss-2022a-CUDA-11.7.0.eb

991e016

boegel added the new label Jan 31, 2024

boegel added this to the 4.x milestone Jan 31, 2024

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

110151c

…asyconfigs into 20240131201717_new_pr_SemiBin202

bedroge approved these changes Feb 5, 2024

View reviewed changes

bedroge merged commit 656b716 into easybuilders:develop Feb 5, 2024

bedroge modified the milestones: 4.x, release after 4.9.0 Feb 5, 2024

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{bio}[foss/2022a] SemiBin v2.0.2 w/ CUDA 11.7.0#19767

{bio}[foss/2022a] SemiBin v2.0.2 w/ CUDA 11.7.0#19767
bedroge merged 2 commits intoeasybuilders:developfrom
boegel:20240131201717_new_pr_SemiBin202

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