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{bio}[intel-compilers/2023.1.0] bwa-mem2 v2.2.1#20217

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akesandgren merged 2 commits intoeasybuilders:developfrom
smoors:20240326170611_new_pr_bwa-mem2221
Mar 28, 2024
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{bio}[intel-compilers/2023.1.0] bwa-mem2 v2.2.1#20217
akesandgren merged 2 commits intoeasybuilders:developfrom
smoors:20240326170611_new_pr_bwa-mem2221

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@smoors smoors commented Mar 26, 2024

(created using eb --new-pr)

@smoors smoors added the new label Mar 26, 2024
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smoors commented Mar 26, 2024

Test report by @smoors
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node303.hydra.os - Linux Rocky Linux 8.8, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/smoors/d1b395109e1f767d504cca70c9020eed for a full test report.

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smoors commented Mar 26, 2024

@boegelbot: please test @ generoso

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@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=20217 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20217 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 13207

Test results coming soon (I hope)...

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- notification for comment with ID 2020952772 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/158de7ddcd7e86b0fb1647c60cd059b8 for a full test report.

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smoors commented Mar 26, 2024

@boegelbot please test @ jsc-zen3

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@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20217 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20217 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 3866

Test results coming soon (I hope)...

Details

- notification for comment with ID 2021102535 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/c4d9e29af0b19623a44b2c26dbafead8 for a full test report.

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Test report by @akesandgren
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
b-cn1603.hpc2n.umu.se - Linux Ubuntu 22.04, x86_64, AMD EPYC 7313 16-Core Processor, 1 x NVIDIA NVIDIA A100 80GB PCIe, 545.29.06, Python 3.10.12
See https://gist.github.com/akesandgren/21b8b2008079cd74135436b2d79afb53 for a full test report.

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It would be better to pull out the safestringlib (the gitmodule it uses) as a standalone library, there is likely other codes that are going to be picking that up in the future.

Could you try to do that?

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Test report by @akesandgren
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
b-cn1603.hpc2n.umu.se - Linux Ubuntu 22.04, x86_64, AMD EPYC 7313 16-Core Processor, 1 x NVIDIA NVIDIA A100 80GB PCIe, 545.29.06, Python 3.10.12
See https://gist.github.com/akesandgren/33b0a98872d522cd333d6ae17036dcbd for a full test report.

@akesandgren akesandgren added this to the release after 4.9.0 milestone Mar 28, 2024
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LGTM

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Going in, thanks @smoors!

@akesandgren akesandgren merged commit bb12f5f into easybuilders:develop Mar 28, 2024
@smoors smoors deleted the 20240326170611_new_pr_bwa-mem2221 branch January 21, 2026 09:25
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3 participants