{lib}[foss/2023a] rMATS-long v1.0.0-20240502 w/ R 4.3.2 by pavelToman · Pull Request #20916 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-06-26T15:05:07Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#355

pavelToman · 2024-06-26T15:05:44Z

@boegelbot please test @ generoso

boegelbot · 2024-06-26T15:10:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20916 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20916 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13822

Test results coming soon (I hope)...

Details

- notification for comment with ID 2191946138 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-26T15:11:49Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/045a49958da5a4ebc81963cd70a0424b for a full test report.

pavelToman · 2024-06-26T15:14:39Z

Test report by @boegelbot FAILED Build succeeded for 0 out of 1 (1 easyconfigs in total) cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/boegelbot/045a49958da5a4ebc81963cd70a0424b for a full test report.

Seems GDAL/3.7.1-foss-2023a is missing on generoso?

EDIT: GDAL fixed

pavelToman · 2024-06-26T15:14:46Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-26T15:20:10Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20916 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20916 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4468

Test results coming soon (I hope)...

Details

- notification for comment with ID 2191967945 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-26T15:21:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/562d3afd97e49172a4df1e9f651203ef for a full test report.

pavelToman · 2024-06-27T09:57:10Z

@boegelbot please test @ generoso

boegelbot · 2024-06-27T10:00:05Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20916 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20916 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13829

Test results coming soon (I hope)...

Details

- notification for comment with ID 2194273743 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-27T10:01:55Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2d98a45d907e09ed3524a542370e31ae for a full test report.

…ing commit that corresponds with 1.0.0 tag

boegel · 2024-07-06T09:55:39Z

@boegelbot please test @ generoso

boegel · 2024-07-06T09:57:10Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3158.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/0c67b124a12c2234df3ea62c06d8de17 for a full test report.

boegelbot · 2024-07-06T10:00:05Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20916 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20916 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13900

Test results coming soon (I hope)...

Details

- notification for comment with ID 2211724316 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-06T10:02:15Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/38690907f373b1355aeb384e43650071 for a full test report.

boegel · 2024-07-06T10:02:35Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-07-06T10:10:08Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20916 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20916 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4532

Test results coming soon (I hope)...

Details

- notification for comment with ID 2211725869 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-06T10:11:30Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/871b2145a33543b57516de2ae135a2bf for a full test report.

boegel · 2024-07-06T15:21:07Z

Going in, thanks @pavelToman!

adding easyconfigs: rMATS-long-1.0.0-foss-2023a-R-4.3.2.eb

dc026f7

pavelToman mentioned this pull request Jun 26, 2024

rMATS-long vscentrum/vsc-software-stack#355

Closed

add datestamp to version in rMATS-long easyconfig, since we're not us…

ef85e1f

…ing commit that corresponds with 1.0.0 tag

boegel changed the title ~~{lib}[foss/2023a] rMATS-long v1.0.0 w/ R 4.3.2~~ {lib}[foss/2023a] rMATS-long v1.0.0-20240502 w/ R 4.3.2 Jul 6, 2024

boegel requested changes Jul 6, 2024

View reviewed changes

Comment thread easybuild/easyconfigs/r/rMATS-long/rMATS-long-1.0.0-foss-2023a-R-4.3.2.eb Outdated

boegel added the new label Jul 6, 2024

boegel added this to the release after 4.9.2 milestone Jul 6, 2024

boegel approved these changes Jul 6, 2024

View reviewed changes

boegel merged commit e4f9d62 into easybuilders:develop Jul 6, 2024

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pavelToman commented Jun 26, 2024 •

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