{bio,lib}[GCC/12.3.0] Transrate v1.0.3, crb-blast v0.6.9, colorize v0.7.7, yell v2.2.2 by PetrKralCZ · Pull Request #20964 · easybuilders/easybuild-easyconfigs

PetrKralCZ · 2024-07-04T12:16:08Z

(created using eb --new-pr)
Needs:

Add support for generating .gem files from .gemspec files and support for preinstallopts in the RubyGem easyblock easybuild-easyblocks#3381

…C-12.3.0.eb, colorize-0.7.7-GCC-12.3.0.eb, yell-2.2.2-GCC-12.3.0.eb

boegel · 2024-07-04T19:12:37Z

@boegelbot please test @ generoso
EB_ARGS="--include-easyblocks-from-pr 3381"

boegelbot · 2024-07-04T19:15:09Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20964 EB_ARGS="--include-easyblocks-from-pr 3381" EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13892

Test results coming soon (I hope)...

Details

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boegel · 2024-07-04T19:30:44Z

Test report by @boegel
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3381
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
node3158.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/3e166b117e4b021e5a13dd3525235e11 for a full test report.

boegel · 2024-07-04T20:19:22Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--include-easyblocks-from-pr 3381"

boegelbot · 2024-07-04T20:20:07Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20964 EB_ARGS="--include-easyblocks-from-pr 3381" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4527

Test results coming soon (I hope)...

Details

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boegelbot · 2024-07-04T20:22:00Z

Test report by @boegelbot
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3381
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/26c429c20231c393fccff795b75aaf54 for a full test report.

boegel · 2024-07-05T06:22:19Z

Hmm, sanity check on jsc-zen3 fails with:

`terminal_columns': undefined method `winsize' for nil (NoMethodError)

PetrKralCZ · 2024-07-23T15:30:24Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-07-23T15:40:08Z

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20964 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4578

Test results coming soon (I hope)...

Details

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it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-23T15:41:44Z

Test report by @boegelbot
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/4bb27e0d3928b6e4899ee4fee4f75541 for a full test report.

PetrKralCZ · 2024-07-24T13:53:09Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-07-24T14:00:08Z

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20964 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4585

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-24T14:01:50Z

Test report by @boegelbot
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/dd8d901bcf09d1864323114dab576b9e for a full test report.

PetrKralCZ · 2024-07-25T09:55:34Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-07-25T10:00:10Z

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20964 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4587

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-25T10:01:56Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/f91e97fb3674fecb6605b0da2f1c530f for a full test report.

PetrKralCZ · 2024-07-25T10:11:13Z

@boegelbot please test @ generoso

boegelbot · 2024-07-25T10:15:09Z

@PetrKralCZ: Request for testing this PR well received on login1

PR test command 'EB_PR=20964 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13954

Test results coming soon (I hope)...

Details

- notification for comment with ID 2249970371 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-07-25T10:19:29Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2d18c4e98280c67aa1c970527b535b48 for a full test report.

boegel

lgtm

boegel · 2024-08-06T12:28:49Z

@boegelbot please test @ generoso

boegel · 2024-08-06T12:29:29Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
node3153.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/a67f90492a1eedce73c3ba9e14270f2f for a full test report.

boegelbot · 2024-08-06T12:30:05Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20964 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20964 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14023

Test results coming soon (I hope)...

Details

- notification for comment with ID 2271173209 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-08-06T12:34:08Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/9007dc0bde9d178fb664851bed8d66c7 for a full test report.

boegel · 2024-08-06T14:11:23Z

Going in, thanks @PetrKralCZ!

adding easyconfigs: Transrate-1.0.3-GCC-12.3.0.eb, crb-blast-0.6.9-GC…

03ec2eb

…C-12.3.0.eb, colorize-0.7.7-GCC-12.3.0.eb, yell-2.2.2-GCC-12.3.0.eb

PetrKralCZ added new update labels Jul 4, 2024

PetrKralCZ marked this pull request as draft July 4, 2024 12:16

boegel added this to the 4.x milestone Jul 4, 2024

PetrKralCZ mentioned this pull request Jul 22, 2024

Transrate vscentrum/vsc-software-stack#224

Closed

2 tasks

PetrKralCZ added 2 commits July 23, 2024 14:26

avoid the winsize error

9616f27

add missing checksum

3452e82

avoid the winsize error

a01ab86

add a patch to fix the winsize error

831ecc2

PetrKralCZ marked this pull request as ready for review July 25, 2024 10:02

boegel changed the title ~~{bio,lib}[GCC/12.3.0] Transrate v1.0.3, crb-blast v0.6.9, colorize v0.7.7, ...~~ {bio,lib}[GCC/12.3.0] Transrate v1.0.3, crb-blast v0.6.9, colorize v0.7.7, yell v2.2.2 Aug 6, 2024

boegel requested changes Aug 6, 2024

View reviewed changes

remove binutils build dependency, not needed when using GCC toolchain

501f4eb

boegel approved these changes Aug 6, 2024

View reviewed changes

boegel merged commit 7d539a9 into easybuilders:develop Aug 6, 2024

boegel modified the milestones: 4.x, release after 4.9.2 Sep 11, 2024

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