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{bio}[GCCcore/12.3.0] HOLE2 v2.3.1#21514

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appolloford:20241001194106_new_pr_HOLE2231
Oct 2, 2024
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{bio}[GCCcore/12.3.0] HOLE2 v2.3.1#21514
Micket merged 3 commits intoeasybuilders:developfrom
appolloford:20241001194106_new_pr_HOLE2231

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(created using eb --new-pr)

Comment thread easybuild/easyconfigs/h/HOLE2/HOLE2-2.3.1-GCCcore-12.3.0.eb Outdated
Comment thread easybuild/easyconfigs/h/HOLE2/HOLE2-2.3.1-GCCcore-12.3.0.eb Outdated
description = """HOLE is a program that allows the analysis and visualisation of
the pore dimensions of the holes through molecular structures of ion channels"""

toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
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Hm, i wonder if GCC is a better level for this (and if so, remember to drop the binutils builddep, which is included with GCC already)

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I thought this but I am not sure whether I should use GCC to have binutils. zlib is not used.

@Micket Micket added the new label Oct 1, 2024
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lgtm

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Micket commented Oct 2, 2024

@boegelbot please test @ jsc-zen3

@Micket Micket added this to the release after 4.9.4 milestone Oct 2, 2024
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@Micket: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21514 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21514 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 4967

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/c388a9580100801f910560f1b6a8fba5 for a full test report.

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Micket commented Oct 2, 2024

@boegelbot please test @ generoso

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@Micket: Request for testing this PR well received on login1

PR test command 'EB_PR=21514 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21514 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 14367

Test results coming soon (I hope)...

Details

- notification for comment with ID 2387799307 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/605b6486df38999db1fcb31bca62f72c for a full test report.

@Micket Micket merged commit f366151 into easybuilders:develop Oct 2, 2024
@boegel boegel modified the milestones: release after 4.9.4, 5.0.0 Mar 18, 2025
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4 participants