{tools} [foss/2015b] shift/4.0 (REVIEW) by wpoely86 · Pull Request #2201 · easybuilders/easybuild-easyconfigs

wpoely86 · 2015-12-09T12:58:17Z

Requires: easybuilders/easybuild-easyblocks#859

hpcugentbot · 2015-12-09T13:14:11Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/5182/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

boegel · 2015-12-09T13:51:51Z

these extensions should be updated, so preferably via a separate PR...

* origin/develop: (975 commits) add comment on recommended CLHEP version in Geant4 easyconfigs vesrionsuffix and libX11 fixes drop libXft easyconfig with versionsuffix fix dep versions add easyconfig libXft-2.3.2-intel-2016a-libX11-1.6.3.eb, add easyconfig libXpm-3.5.11-intel-2016a.eb, add easyconfig libXrender-0.9.9-intel-2016a.eb, add easyconfig renderproto-0.11-intel-2016a.eb " corrected {lang}[intel-2016a] Python 2.7.11 with libX11 1.6.3 (REVIEW) SHLIB_EXT Extra ampty line removed Comments removed SYMlink modify easyconfig Platypus-0.8.1-intel-2016a-Python-2.7.11.eb add easyconfig Platypus-0.8.1-intel-2016a-Python-2.7.11.eb fix spacing remark in description fix remark {bio}[intel/2016a] BCFtools 1.3 + HTSlib 1.3 {vis}[intel-2016a] Tk 8.6.4 witg libX11 1.6.3 (REVIEW) fix remarks, add OpenSSL 1.0.1s easyconfig add comments in patch files for R extensions add patch file to build glasso with recent ifort ...

hpcugentbot · 2016-03-04T11:22:49Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6781/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

hpcugentbot · 2016-03-07T12:30:46Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6833/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

hpcugentbot · 2016-03-07T14:49:21Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6841/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-07T15:45:19Z

Test report by @wpoely86
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2611.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/cef3ec52c4a6a112c8a7 for a full test report.

boegel · 2016-03-07T15:51:53Z

@wpoely86: I'd like to see either this PR good to go, or have the mutil easyconfig fleshed out in a separate PR, before merging easybuilders/easybuild-easyblocks#859...

I don't like changing an easyblock without having a use case for it (that is merged into develop).

wpoely86 · 2016-03-07T15:53:06Z

@boegel it's good to go, tests are running.

wpoely86 · 2016-03-07T16:04:02Z

Test report by @wpoely86
FAILED
Build succeeded for 5 out of 6 (6 easyconfigs in this PR)
node2618.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/32f9b2a5e3a10061bcae for a full test report.

hpcugentbot · 2016-03-07T16:59:54Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6848/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-07T17:01:09Z

Test report by @wpoely86
FAILED
Build succeeded for 2 out of 3 (1 easyconfigs in this PR)
node2611.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/bc1ca26556dcd1c01273 for a full test report.

hpcugentbot · 2016-03-07T17:10:09Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6849/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-07T18:37:41Z

Test report by @wpoely86
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in this PR)
node2726.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/3d5e8032e7566db5e94a for a full test report.

wpoely86 · 2016-03-07T19:48:35Z

Test report by @wpoely86
FAILED
Build succeeded for 10 out of 14 (7 easyconfigs in this PR)
node2107.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/f4ca8bc89290d2effc46 for a full test report.

hpcugentbot · 2016-03-08T14:23:03Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6899/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-08T14:30:43Z

My entry for 'most unreadable shell script ever':

sed -n "s:\s*('\([^']\+\)',\s*'\([^']\+\)',.*:\1\t\2:p" Perl-5.22.1-intel-2016a.eb  > ext.txt
cat ext.txt | while read lijn; do name=$(echo $lijn | cut -f1 -d ' '); echo $name; version=$(echo $lijn | cut -f2  -d ' ') ; echo $version; upversion=$(curl "api.metacpan.org/v0/module/$name" 2>/dev/null | sed -n 's#\s*"version" : "\([^"]\+\)".*#\1#p' | tail -n 1); echo -e "$version\t$upversion"; sed -i "s#'$name',\s*'$version',#'$name', '$upversion',#" Perl-5.22.1-intel-2016a.eb; done

which should update all Perl extensions.

wpoely86 · 2016-03-08T14:33:47Z

Test report by @wpoely86
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in this PR)
node2704.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/bd4c626506eee9e9a423 for a full test report.

wpoely86 · 2016-03-08T15:03:58Z

Test report by @wpoely86
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in this PR)
node2021.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/8b8ceaca1c2d1f3322e5 for a full test report.

wpoely86 · 2016-03-08T15:10:00Z

Test report by @wpoely86
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in this PR)
node2704.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/4b9141260b421401e84b for a full test report.

boegel · 2016-03-08T15:11:26Z

+        'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'],
+    }),
+    ('TAP::Harness::Env', '3.36', {
+        'source_tmpl': 'Test-Harness-3.35.tar.gz',


versions don't align?

hpcugentbot · 2016-03-08T15:31:29Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6902/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

hpcugentbot · 2016-03-08T15:35:21Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6903/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-08T15:50:39Z

Test report by @wpoely86
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in this PR)
node2704.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/30a4ad7067cf45a539d0 for a full test report.

wpoely86 · 2016-03-08T16:33:38Z

Test report by @wpoely86
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in this PR)
node2021.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/f69f04c5e9f2681df3d4 for a full test report.

boegel · 2016-03-08T16:33:46Z

@wpoely86: please use Perl easyconfig from #2671?

* develop: (109 commits) enable XML::Bare in all Perl easyconfigs {lang}[intel/2016a] Perl 5.22.1 remove unneeded specs in FastQC easyconfigs add easyconfig fixesproto-5.0-gimkl-2.11.5.eb, add easyconfig fontsproto-2.1.3-gimkl-2.11.5.eb, add easyconfig freetype-2.6.2-gimkl-2.11.5.eb, add easyconfig inputproto-2.3.1-gimkl-2.11.5.eb, add easyconfig kbproto-1.0.7-gimkl-2.11.5.eb, add easyconfig libX11-1.6.3-gimkl-2.11.5.eb, add easyconfig libXau-1.0.8-gimkl-2.11.5.eb, add easyconfig libXdamage-1.1.4-gimkl-2.11.5.eb, add easyconfig libXdmcp-1.1.2-gimkl-2.11.5.eb, add easyconfig libXext-1.3.3-gimkl-2.11.5.eb, add easyconfig libXfixes-5.0.1-gimkl-2.11.5.eb, add easyconfig libXfont-1.5.1-gimkl-2.11.5.eb, add easyconfig libfontenc-1.1.3-gimkl-2.11.5.eb, add easyconfig libpng-1.6.21-gimkl-2.11.5.eb, add easyconfig libpthread-stubs-0.3-gimkl-2.11.5.eb, add easyconfig libxcb-1.11.1-gimkl-2.11.5.eb, add easyconfig xextproto-7.3.0-gimkl-2.11.5.eb, add easyconfig xorg-macros-1.19.0-gimkl-2.11.5.eb, add easyconfig xproto-7.0.28-gimkl-2.11.5.eb, add easyconfig xtrans-1.3.5-gimkl-2.11.5.eb add easyconfig CMake-3.4.3-gimkl-2.11.5.eb add easyconfig Autoconf-2.69-gimkl-2.11.5.eb, add easyconfig Automake-1.15-gimkl-2.11.5.eb, add easyconfig Autotools-20150215-gimkl-2.11.5.eb, add easyconfig GMP-6.1.0-gimkl-2.11.5.eb, add easyconfig Python-2.7.11-gimkl-2.11.5.eb, add easyconfig SQLite-3.9.2-gimkl-2.11.5.eb, add easyconfig libtool-2.4.6-gimkl-2.11.5.eb stick to libxml2 2.9.2 in GLib 2.46.0 easyconfig (w/ Python 2.7.10) fix GLib/Python version conflict ssssss.... {tools}[intel-2016a] GLPK 4.58 (REVIEW) add virtualenv for python 2.7.11 version problems comment corrected fix libxml2 conflict Tck/Tk dep deleted fix style & sync issues in FastQC easyconfigs space corrected commas fixed in libcerf {vis}[intel-2016a] gnuplot 5.0.3 (REVIEW) More consistent sanity checks ...

hpcugentbot · 2016-03-08T16:59:11Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6910/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

boegel · 2016-03-09T08:13:34Z

+
+coreutils_maj = '8'
+coreutils_min = '22'
+version = '1.%s%s.3' % (coreutils_maj, coreutils_min)


please push this up right under name

hpcugentbot · 2016-03-09T13:38:05Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6950/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

wpoely86 · 2016-03-09T14:20:00Z

Test report by @wpoely86
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in this PR)
node2631.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/1a82a8551a624d0b83f1 for a full test report.

boegel · 2016-03-09T14:53:17Z

Jenkins: test this please

hpcugentbot · 2016-03-09T15:14:15Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6960/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

boegel · 2016-03-09T15:40:53Z

Going in, thanks @wpoely86!

{tools} [foss/2015b] shift/4.0 (REVIEW)

wpoely86 added 2 commits December 9, 2015 13:56

Add deps for shift

c5e37e8

Added shift/4.0 for foss/2015b

26c49f8

boegel reviewed Dec 9, 2015
View reviewed changes

boegel modified the milestone: v2.7.0 Jan 23, 2016

wpoely86 added 2 commits March 4, 2016 11:43

Move to intel 2016a

e6490b9

wpoely86 added 5 commits March 4, 2016 13:00

Add libgcrypt and libgpg-error

326e6c8

Fix url for libgcrypt

f5c8261

Add mutil

2f9e2de

Fix mutil to copy & rename

2c5348e

Add mutil to shift

5489904

Adjust mutil for easyblock

a925cd1

boegel mentioned this pull request Mar 7, 2016

Easyblock for mutil + MakeCp enhancement. easybuilders/easybuild-easyblocks#859

Merged

wpoely86 changed the title ~~{tools} [foss/2015b] shift/4.0 (WIP)~~ {tools} [foss/2015b] shift/4.0 (REVIEW) Mar 7, 2016

wpoely86 added 2 commits March 7, 2016 17:43

Fix shift easyconfig

62238b6

Add missing dep

6dc78e3

Fix remarks

8f58797

Fix shift download url

8669cc7

boegel reviewed Mar 8, 2016
View reviewed changes

Do extensions update in other PR

7d7e21c

boegel reviewed Mar 9, 2016
View reviewed changes

Fix remark

004d3d3

boegel added a commit that referenced this pull request Mar 9, 2016

Merge pull request #2201 from wpoely86/shift

8935170

{tools} [foss/2015b] shift/4.0 (REVIEW)

boegel merged commit 8935170 into easybuilders:develop Mar 9, 2016

wpoely86 deleted the shift branch March 9, 2016 15:50

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