{ai}[foss/2023a] HNOCA-tools v0.1.1 + GPU version (CUDA-12.1.1) by pavelToman · Pull Request #22165 · easybuilders/easybuild-easyconfigs

pavelToman · 2025-01-16T14:54:27Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#486

pavelToman · 2025-01-16T14:55:33Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-01-16T15:00:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22165 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22165 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5540

Test results coming soon (I hope)...

Details

- notification for comment with ID 2595945434 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-01-16T15:05:18Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/315a31677692a892d2b8d930a3c1428f for a full test report.

pavelToman · 2025-01-16T15:06:50Z

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4011.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/pavelToman/91e34da20718f0b1a26213384ac64f00 for a full test report.

github-actions · 2025-01-16T15:30:54Z

Updated software `HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb`

Diff against HNOCA-tools-0.1.1-foss-2023a.eb

easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a.eb b/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb
index f59319c9cf..f58b9b821f 100644
--- a/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb
@@ -2,6 +2,7 @@ easyblock = 'PythonBundle'
 
 name = 'HNOCA-tools'
 version = '0.1.1'
+versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/devsystemslab/HNOCA-tools/'
 description = "Toolbox of the Human Neural Organoid Cell Atlas."
@@ -10,14 +11,15 @@ toolchain = {'name': 'foss', 'version': '2023a'}
 
 builddependencies = [('poetry', '1.5.1')]
 dependencies = [
+    ('CUDA', '12.1.1', '', SYSTEM),
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),
     ('anndata', '0.10.5.post1'),
     ('scanpy', '1.9.8'),
-    ('scvi-tools', '1.1.2'),
+    ('scvi-tools', '1.1.2', versionsuffix),
     ('statsmodels', '0.14.1'),
     ('matplotlib', '3.7.2'),
-    ('scArches', '0.6.1'),
+    ('scArches', '0.6.1', versionsuffix),
     ('numba', '0.58.1'),
     ('scikit-learn', '1.3.1'),
 ]

Updated software `HNOCA-tools-0.1.1-foss-2023a.eb`

Diff against HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb

easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb

diff --git a/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb b/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a.eb
index f58b9b821f..f59319c9cf 100644
--- a/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb
+++ b/easybuild/easyconfigs/h/HNOCA-tools/HNOCA-tools-0.1.1-foss-2023a.eb
@@ -2,7 +2,6 @@ easyblock = 'PythonBundle'
 
 name = 'HNOCA-tools'
 version = '0.1.1'
-versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/devsystemslab/HNOCA-tools/'
 description = "Toolbox of the Human Neural Organoid Cell Atlas."
@@ -11,15 +10,14 @@ toolchain = {'name': 'foss', 'version': '2023a'}
 
 builddependencies = [('poetry', '1.5.1')]
 dependencies = [
-    ('CUDA', '12.1.1', '', SYSTEM),
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),
     ('anndata', '0.10.5.post1'),
     ('scanpy', '1.9.8'),
-    ('scvi-tools', '1.1.2', versionsuffix),
+    ('scvi-tools', '1.1.2'),
     ('statsmodels', '0.14.1'),
     ('matplotlib', '3.7.2'),
-    ('scArches', '0.6.1', versionsuffix),
+    ('scArches', '0.6.1'),
     ('numba', '0.58.1'),
     ('scikit-learn', '1.3.1'),
 ]

pavelToman · 2025-01-16T15:33:39Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-01-16T15:40:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22165 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22165 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5541

Test results coming soon (I hope)...

Details

- notification for comment with ID 2596043931 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-01-16T15:49:04Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/8e717cc1a50ef8763000ac0b04900a22 for a full test report.

pavelToman · 2025-01-16T15:53:45Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node4011.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/pavelToman/57c5a51ed9f0fbd64c553039b652ea44 for a full test report.

boegel

lgtm

boegel · 2025-01-21T10:12:31Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3107.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/34de23835d46d07a48f25b74b313c37c for a full test report.

boegel · 2025-01-22T08:07:26Z

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3304.joltik.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), 1 x NVIDIA Tesla V100-SXM2-32GB, 555.42.06, Python 3.9.18
See https://gist.github.com/boegel/0c1a55205689552dc10ad665d6675847 for a full test report.

boegel · 2025-01-22T11:53:14Z

Going in, thanks @pavelToman!

adding easyconfigs: HNOCA-tools-0.1.1-foss-2023a.eb

f35230c

pavelToman added the new label Jan 16, 2025

pavelToman mentioned this pull request Jan 16, 2025

HNOCA-tools vscentrum/vsc-software-stack#486

Closed

1 task

add gpu version

9758acd

github-actions Bot added update and removed new labels Jan 16, 2025

pavelToman changed the title ~~{ai}[foss/2023a] HNOCA-tools v0.1.1~~ {ai}[foss/2023a] HNOCA-tools v0.1.1 + GPU version (CUDA-12.1.1) Jan 16, 2025

boegel added new and removed update labels Jan 21, 2025

boegel added this to the release after 4.9.4 milestone Jan 21, 2025

boegel approved these changes Jan 21, 2025

View reviewed changes

boegel merged commit df42cef into easybuilders:develop Jan 22, 2025

boegel modified the milestones: release after 4.9.4, 5.0.0 Mar 18, 2025

Conversation

pavelToman commented Jan 16, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

pavelToman commented Jan 16, 2025

Uh oh!

boegelbot commented Jan 16, 2025

Uh oh!

boegelbot commented Jan 16, 2025

Uh oh!

pavelToman commented Jan 16, 2025

Uh oh!

github-actions Bot commented Jan 16, 2025

Updated software HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb

Updated software HNOCA-tools-0.1.1-foss-2023a.eb

Uh oh!

pavelToman commented Jan 16, 2025

Uh oh!

boegelbot commented Jan 16, 2025

Uh oh!

boegelbot commented Jan 16, 2025

Uh oh!

pavelToman commented Jan 16, 2025

Uh oh!

boegel left a comment

Choose a reason for hiding this comment

Uh oh!

boegel commented Jan 21, 2025

Uh oh!

boegel commented Jan 22, 2025

Uh oh!

boegel commented Jan 22, 2025

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

pavelToman commented Jan 16, 2025 •

edited

Loading

Updated software `HNOCA-tools-0.1.1-foss-2023a-CUDA-12.1.1.eb`

Updated software `HNOCA-tools-0.1.1-foss-2023a.eb`