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disable keepsymlinks in libStatGen#22565

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branfosj merged 1 commit intoeasybuilders:5.0.xfrom
lexming:fix-libstatgen
Mar 15, 2025
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disable keepsymlinks in libStatGen#22565
branfosj merged 1 commit intoeasybuilders:5.0.xfrom
lexming:fix-libstatgen

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@lexming lexming commented Mar 15, 2025 •
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ERROR: Installation of libStatGen-1.0.15-GCCcore-12.3.0.eb failed: "Sanity check failed: no file found at 'include/VcfFile.h' in /user/brussel/101/vsc10122/easybuild/install/zen2/software/libStatGen/1.0.15-GCCcore-12.3.0\nno file found at 'include/SamFile.h' in /user/brussel/101/vsc10122/easybuild/install/zen2/software/libStatGen/1.0.15-GCCcore-12.3.0\nno file found at 'include/BamIndex.h' in /user/brussel/101/vsc10122/easybuild/install/zen2/software/libStatGen/1.0.15-GCCcore-12.3.0\nno file found at 'include/Cigar.h' in /user/brussel/101/vsc10122/easybuild/install/zen2/software/libStatGen/1.0.15-GCCcore-12.3.0"

@lexming lexming added the EasyBuild-5.0 EasyBuild 5.0 label Mar 15, 2025
@lexming lexming added this to the 5.0.0 milestone Mar 15, 2025
@lexming lexming mentioned this pull request Mar 15, 2025
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@lexming lexming added bug fix and removed change labels Mar 15, 2025
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lexming commented Mar 15, 2025

@boegelbot please test @ jsc-zen3
EB_BRANCH=5.0.x

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boegelbot commented Mar 15, 2025

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ "5.0.x" != 'develop' ]]; then EB_BRANCH="5.0.x" ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/"5.0.x" source init_env_easybuild_develop.sh; fi; EB_PR=22565 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH="5.0.x" /opt/software/slurm/bin/sbatch --job-name test_PR_22565 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 5948

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Mar 15, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/67b35590da9315c3121c4cc5ceb148d8 for a full test report.

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branfosj commented Mar 15, 2025

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/07a35d42411ff4748a0af12354fa6b92 for a full test report.

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branfosj commented Mar 15, 2025

Going in, thanks @lexming!

@branfosj branfosj merged commit 681b0f7 into easybuilders:5.0.x Mar 15, 2025
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@lexming lexming deleted the fix-libstatgen branch March 15, 2025 11:13
@branfosj branfosj mentioned this pull request Mar 15, 2025
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bug fix EasyBuild-5.0 EasyBuild 5.0

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