{bio}[foss/2024a] EMD v0.8.1 by branfosj · Pull Request #22734 · easybuilders/easybuild-easyconfigs

branfosj · 2025-04-09T12:36:31Z

(created using eb --new-pr)

branfosj · 2025-04-09T12:53:37Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/3888b63b0f8beb707bd0ce049c413560 for a full test report.

branfosj · 2025-04-09T12:55:38Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-04-09T13:00:08Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22734 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22734 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6141

Test results coming soon (I hope)...

Details

- notification for comment with ID 2789612488 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-04-09T13:02:41Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/d35ad6560489c1f005521785d086a46e for a full test report.

branfosj · 2025-04-09T16:13:26Z

Test report by @branfosj
SUCCESS
Build succeeded for 18 out of 18 (1 easyconfigs in total)
bear-pg0210u03b - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/559b27c0ea3321c3f905c617f5f10984 for a full test report.

branfosj · 2025-04-10T07:40:51Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0210u03b - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/f79beccba5624cdd0591683184a39027 for a full test report.

Co-authored-by: Jasper Grimm <[email protected]>

jfgrimm · 2025-06-16T15:20:32Z

@boegelbot: please test @ jsc-zen3

branfosj · 2025-06-16T15:21:13Z

Test report by @branfosj
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0210u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/00477ee646a0cc9d88b0454f73cd77ba for a full test report.

boegelbot · 2025-06-16T15:30:31Z

@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22734 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22734 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6787

Test results coming soon (I hope)...

Details

- notification for comment with ID 2977068432 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-16T15:31:47Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/a5845534624bae04771e643945e65ccb for a full test report.

jfgrimm · 2025-06-16T15:38:49Z

I guess it actually needs a more recent version of setuptools_scm than what Python-3.11.3-GCCcore-12.3.0.eb provides...

github-actions · 2025-06-16T15:52:41Z

Updated software `EMD-0.8.1-foss-2023a.eb`

Diff against EMD-0.8.1-foss-2024a.eb

easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2024a.eb

diff --git a/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2024a.eb b/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb
index 9c13bc0067..b2b1fa43ed 100644
--- a/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2024a.eb
+++ b/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb
@@ -7,18 +7,18 @@ version = '0.8.1'
 homepage = "https://emd.readthedocs.io/"
 description = """Python tools for the extraction and analysis of non-linear and non-stationary oscillatory signals."""
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 
 builddependencies = [
-    ('hatchling', '1.24.2'),
+    ('hatchling', '1.18.0'),
 ]
 
 dependencies = [
-    ('Python', '3.12.3'),
-    ('SciPy-bundle', '2024.05'),
-    ('numba', '0.60.0'),
-    ('matplotlib', '3.9.2'),
-    ('PyYAML', '6.0.2'),
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+    ('numba', '0.58.1'),
+    ('matplotlib', '3.7.2'),
+    ('PyYAML', '6.0'),
 ]
 
 exts_list = [
@@ -29,6 +29,7 @@ exts_list = [
         'checksums': ['26973e5dc80d54a37dfc2622ec554c5a3aa8396c4bafe7e9da59d2101b133588'],
     }),
     ('emd', version, {
+        'preinstallopts': 'sed -i "/Programming Language :: Python :: 3.13/d" pyproject.toml &&',
         'checksums': ['91c75201df0f1f338ca760496268274f2bb53cd52ea966d31865629a38a3a6a2'],
     }),
 ]

Updated software `EMD-0.8.1-foss-2024a.eb`

Diff against EMD-0.8.1-foss-2023a.eb

easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb b/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2024a.eb
index b2b1fa43ed..9c13bc0067 100644
--- a/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2024a.eb
@@ -7,18 +7,18 @@ version = '0.8.1'
 homepage = "https://emd.readthedocs.io/"
 description = """Python tools for the extraction and analysis of non-linear and non-stationary oscillatory signals."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 
 builddependencies = [
-    ('hatchling', '1.18.0'),
+    ('hatchling', '1.24.2'),
 ]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('numba', '0.58.1'),
-    ('matplotlib', '3.7.2'),
-    ('PyYAML', '6.0'),
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('numba', '0.60.0'),
+    ('matplotlib', '3.9.2'),
+    ('PyYAML', '6.0.2'),
 ]
 
 exts_list = [
@@ -29,7 +29,6 @@ exts_list = [
         'checksums': ['26973e5dc80d54a37dfc2622ec554c5a3aa8396c4bafe7e9da59d2101b133588'],
     }),
     ('emd', version, {
-        'preinstallopts': 'sed -i "/Programming Language :: Python :: 3.13/d" pyproject.toml &&',
         'checksums': ['91c75201df0f1f338ca760496268274f2bb53cd52ea966d31865629a38a3a6a2'],
     }),
 ]

branfosj · 2025-06-16T15:53:43Z

I guess it actually needs a more recent version of setuptools_scm than what Python-3.11.3-GCCcore-12.3.0.eb provides...

aba5dfb and 62bd004 is my answer to that!

branfosj · 2025-06-16T16:07:33Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-06-16T16:10:11Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22734 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22734 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6792

Test results coming soon (I hope)...

Details

- notification for comment with ID 2977218778 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2025-06-16T16:10:12Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/4cc6ff250dfedec9ff9d6a4fc4d63c6b for a full test report.

boegelbot · 2025-06-16T16:13:26Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/2b8f68cbcbe4b77d41765528217b7223 for a full test report.

jfgrimm

lgtm

jfgrimm · 2025-06-16T16:41:34Z

Going in, thanks @branfosj!

adding easyconfigs: EMD-0.8.1-foss-2023a.eb

9a22371

branfosj added the new label Apr 9, 2025

jfgrimm requested changes Apr 17, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/e/EMD/EMD-0.8.1-foss-2023a.eb Outdated

done

3fc9050

Co-authored-by: Jasper Grimm <[email protected]>

Merge branch 'easybuilders:develop' into 20250409133624_new_pr_EMD081

ec71bd7

switch to 2024a

aba5dfb

github-actions Bot added update and removed new labels Jun 16, 2025

branfosj changed the title ~~{bio}[foss/2023a] EMD v0.8.1~~ {bio}[foss/2024a] EMD v0.8.1 Jun 16, 2025

and delete the 2023a version

62bd004

github-actions Bot added new and removed update labels Jun 16, 2025

jfgrimm added this to the next release (5.1.1?) milestone Jun 16, 2025

jfgrimm approved these changes Jun 16, 2025

View reviewed changes

jfgrimm merged commit ef445c0 into easybuilders:develop Jun 16, 2025
5 checks passed

branfosj deleted the 20250409133624_new_pr_EMD081 branch June 16, 2025 17:39

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branfosj commented Apr 9, 2025

Uh oh!

branfosj commented Apr 9, 2025

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branfosj commented Apr 9, 2025

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boegelbot commented Apr 9, 2025

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branfosj commented Apr 9, 2025

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branfosj commented Apr 10, 2025

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jfgrimm commented Jun 16, 2025

Uh oh!

branfosj commented Jun 16, 2025

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boegelbot commented Jun 16, 2025

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boegelbot commented Jun 16, 2025

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jfgrimm commented Jun 16, 2025

Uh oh!

github-actions Bot commented Jun 16, 2025

Updated software EMD-0.8.1-foss-2023a.eb

Updated software EMD-0.8.1-foss-2024a.eb

Uh oh!

branfosj commented Jun 16, 2025

Uh oh!

branfosj commented Jun 16, 2025

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boegelbot commented Jun 16, 2025

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branfosj commented Jun 16, 2025

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Updated software `EMD-0.8.1-foss-2023a.eb`

Updated software `EMD-0.8.1-foss-2024a.eb`