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fix get_good_inter_pae.py script in AlphaPulldown v2.0.3 + use proper dependency for tokenizers in Uni-Core v0.0.3#22758

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pavelToman:20250414151859_new_pr_AlphaPulldown203
May 14, 2025
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fix get_good_inter_pae.py script in AlphaPulldown v2.0.3 + use proper dependency for tokenizers in Uni-Core v0.0.3#22758
boegel merged 2 commits intoeasybuilders:developfrom
pavelToman:20250414151859_new_pr_AlphaPulldown203

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@pavelToman pavelToman commented Apr 14, 2025 •
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(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#517

@pavelToman pavelToman changed the title fix get_good_inter_pae.py script update AlphaPulldown v2.0.3 w/ CUDA 12.1.1 - fix get_good_inter_pae.py script Apr 14, 2025
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pavelToman commented Apr 14, 2025

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4014.donphan.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 570.86.15, Python 3.9.18
See https://gist.github.com/pavelToman/590195c2f03f89f884e7aa68b503dbe2 for a full test report.

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pavelToman commented Apr 14, 2025

@boegelbot please test @ jsc-zen3-a100

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boegelbot commented Apr 14, 2025

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22758 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22758 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6170

Test results coming soon (I hope)...

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boegelbot commented Apr 14, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 555.42.06, Python 3.9.21
See https://gist.github.com/boegelbot/cd164bb1437a663cd366bc572fbe74a5 for a full test report.

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pavelToman commented Apr 14, 2025

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3308.joltik.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz, 1 x NVIDIA Tesla V100-SXM2-32GB, 570.86.15, Python 3.9.18
See https://gist.github.com/pavelToman/ad262c33c16fb6020c5a86b523eb80c1 for a full test report.

@pavelToman pavelToman changed the title update AlphaPulldown v2.0.3 w/ CUDA 12.1.1 - fix get_good_inter_pae.py script update AlphaPulldown v2.0.3 and Uni-Core v0.0.3 w/ CUDA 12.1.1 - fix get_good_inter_pae.py script + use tokenizers from easyconfigs Apr 15, 2025
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pavelToman commented Apr 15, 2025

@boegelbot please test @ jsc-zen3-a100

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boegelbot commented Apr 15, 2025

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22758 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22758 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6177

Test results coming soon (I hope)...

Details

- notification for comment with ID 2806903940 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Apr 15, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 555.42.06, Python 3.9.21
See https://gist.github.com/boegelbot/e79662e1d9268eb3a8e68f66cff7660e for a full test report.

@pavelToman pavelToman mentioned this pull request Apr 15, 2025
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pavelToman commented Apr 15, 2025

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3901.accelgor.os - Linux RHEL 9.4, x86_64, AMD EPYC 7413 24-Core Processor, 1 x NVIDIA NVIDIA A100-SXM4-80GB, 570.86.15, Python 3.9.18
See https://gist.github.com/pavelToman/5d1d4bf6e23f714d4463f570b3a52c98 for a full test report.

@boegel boegel changed the title update AlphaPulldown v2.0.3 and Uni-Core v0.0.3 w/ CUDA 12.1.1 - fix get_good_inter_pae.py script + use tokenizers from easyconfigs fix `get_good_inter_pae.py script in AlphaPulldown v2.0.3 + use proper dependency for tokenizers in Uni-Core v0.0.3 May 13, 2025
@boegel boegel changed the title fix `get_good_inter_pae.py script in AlphaPulldown v2.0.3 + use proper dependency for tokenizers in Uni-Core v0.0.3 fix get_good_inter_pae.py script in AlphaPulldown v2.0.3 + use proper dependency for tokenizers in Uni-Core v0.0.3 May 13, 2025
@boegel boegel added bug fix and removed change labels May 13, 2025
@boegel boegel added this to the 5.0.1 milestone May 13, 2025
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boegel approved these changes May 13, 2025
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lgtm

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boegel commented May 14, 2025

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3308.joltik.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz (cascadelake), 1 x NVIDIA Tesla V100-SXM2-32GB, 570.86.15, Python 3.9.18
See https://gist.github.com/boegel/56deab635598425c2f1b9abb77d20373 for a full test report.

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boegel commented May 14, 2025

Going in, thanks @pavelToman!

@boegel boegel merged commit cde78ed into easybuilders:develop May 14, 2025
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