Skip to content

add ggpicrust2 and required dependencies to R-bundle-Bioconductor v3.20 and R-bundle-CRAN v2024.11#23026

Merged
smoors merged 1 commit intoeasybuilders:developfrom
lexming:20250604115405_new_pr_R-bundle-CRAN202411
Jun 16, 2025
Merged

add ggpicrust2 and required dependencies to R-bundle-Bioconductor v3.20 and R-bundle-CRAN v2024.11#23026
smoors merged 1 commit intoeasybuilders:developfrom
lexming:20250604115405_new_pr_R-bundle-CRAN202411

Conversation

@lexming
Copy link
Copy Markdown
Contributor

@lexming lexming commented Jun 4, 2025

(created using eb --new-pr)

@github-actions github-actions Bot added the change label Jun 4, 2025
@lexming
Copy link
Copy Markdown
Contributor Author

lexming commented Jun 4, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="--skip"

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Jun 4, 2025

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23026 EB_ARGS="--skip" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23026 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6598

Test results coming soon (I hope)...

Details

- notification for comment with ID 2939383852 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Jun 4, 2025

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/dce994526b92c0a717710b8121af8a53 for a full test report.

@lexming
Copy link
Copy Markdown
Contributor Author

lexming commented Jun 4, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="--skip R-bundle-Bioconductor-3.20-foss-2024a-R-4.4.2.eb"

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Jun 4, 2025

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23026 EB_ARGS="--skip R-bundle-Bioconductor-3.20-foss-2024a-R-4.4.2.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23026 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6601

Test results coming soon (I hope)...

Details

- notification for comment with ID 2939582764 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Copy Markdown
Collaborator

boegelbot commented Jun 4, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/8c6b22f0258e984229718f8fd8ba8112 for a full test report.

@branfosj branfosj mentioned this pull request Jun 5, 2025
Closed
@smoors smoors added enhancement and removed change labels Jun 16, 2025
@smoors smoors added this to the next release (5.1.1?) milestone Jun 16, 2025
smoors
smoors approved these changes Jun 16, 2025
View reviewed changes
Copy link
Copy Markdown
Contributor

@smoors smoors left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@smoors
Copy link
Copy Markdown
Contributor

smoors commented Jun 16, 2025

Going in, thanks @lexming!

@smoors smoors merged commit 757961d into easybuilders:develop Jun 16, 2025
8 checks passed
@lexming lexming deleted the 20250604115405_new_pr_R-bundle-CRAN202411 branch June 16, 2025 13:14
@boegel boegel changed the title add ggpicrust2 and missing dependencies to R-bundle-Bioconductor v3.20 and R-bundle-CRAN v2024.11 add ggpicrust2 and required dependencies to R-bundle-Bioconductor v3.20 and R-bundle-CRAN v2024.11 Jul 5, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@smoors smoors smoors approved these changes

Assignees

No one assigned

Labels

enhancement

Projects

None yet

Milestone

5.1.1

Development

Successfully merging this pull request may close these issues.

3 participants

@lexming @boegelbot @smoors