add missing `zlib` dependency to `Serf` by branfosj · Pull Request #23118 · easybuilders/easybuild-easyconfigs

branfosj · 2025-06-17T12:02:05Z

(created using eb --new-pr)

Hopefully fix the build failure seen in #23115 (comment)

branfosj · 2025-06-17T12:02:54Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-06-17T12:10:20Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6839

Test results coming soon (I hope)...

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branfosj · 2025-06-17T12:15:16Z

Test report by @branfosj
SUCCESS
Build succeeded for 12 out of 12 (3 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/3f7be8660654526abf444ab3db4da09f for a full test report.

boegelbot · 2025-06-17T12:15:57Z

Test report by @boegelbot
FAILED
Build succeeded for 3 out of 6 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/0154eb5589b51c2c6c523542350f4ee4 for a full test report.

branfosj · 2025-06-17T12:23:43Z

@boegelbot please test @ jsc-zen3

branfosj · 2025-06-17T12:25:09Z

Test report by @branfosj
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/d2a8118018c6d36e755ed7459f598350 for a full test report.

boegelbot · 2025-06-17T12:30:09Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6841

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2025-06-17T12:31:44Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/eeaa8fd56bba86c630ea9c7e5b41476f for a full test report.

branfosj · 2025-06-17T13:19:35Z

I'm out of ideas for fixing this ...

jfgrimm · 2025-06-17T13:34:26Z

@branfosj commit f2034fa55f3ca1f96e1095107da4fc108231b816 added the ZLIB=... buildopt but removed the zlib dependency again
maybe try with both?

jfgrimm · 2025-06-17T13:39:21Z

@boegelbot please test @ jsc-zen3
EB_ARGS=Serf-1.3.9-GCCcore-11.3.0.eb

boegelbot · 2025-06-17T13:40:08Z

@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS="Serf-1.3.9-GCCcore-11.3.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6849

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2025-06-17T13:50:47Z

@boegelbot please test @ jsc-zen3
EB_ARGS="Serf-1.3.9-GCCcore-11.2.0.eb"

boegelbot · 2025-06-17T14:00:11Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS="Serf-1.3.9-GCCcore-11.2.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6850

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980468823 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-17T14:00:58Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/010976be0f993292bc42171a9644253f for a full test report.

jfgrimm · 2025-06-17T14:05:32Z

got another idea

jfgrimm · 2025-06-17T14:05:57Z

@boegelbot please test @ jsc-zen3
EB_ARGS=Serf-1.3.9-GCCcore-11.3.0.eb

boegelbot · 2025-06-17T14:10:11Z

@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS="Serf-1.3.9-GCCcore-11.3.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6851

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980523074 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-17T14:10:44Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/2eef4f694f9e7ef2affca31ca254db24 for a full test report.

branfosj · 2025-06-17T14:15:18Z

@boegelbot please test @ jsc-zen3
EB_ARGS=Serf-1.3.9-GCCcore-11.3.0.eb

boegelbot · 2025-06-17T14:20:13Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS="Serf-1.3.9-GCCcore-11.3.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6853

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980559041 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-17T14:20:52Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/49291d222d8e180b09c496fd736608e4 for a full test report.

branfosj · 2025-06-17T14:22:54Z

@jfgrimm Progress! A different error now

/bin/ld: cannot find -lz
collect2: error: ld returned 1 exit status

branfosj · 2025-06-17T14:26:18Z

@boegelbot please test @ jsc-zen3
EB_ARGS=Serf-1.3.9-GCCcore-11.3.0.eb

boegelbot · 2025-06-17T14:30:14Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS="Serf-1.3.9-GCCcore-11.3.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6855

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980598547 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-17T14:31:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/c755c0844a6f81ae4c17eebf41b4fec4 for a full test report.

branfosj · 2025-06-17T14:33:51Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-06-17T14:40:10Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23118 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23118 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6856

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980630330 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-06-17T14:42:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c4.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/92e728c639c9242dbdf028028b5afab4 for a full test report.

jfgrimm · 2025-06-17T14:46:55Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 12 out of 12 (3 easyconfigs in total)
node056.viking2.yor.alces.network - Linux Rocky Linux 8.9, x86_64, AMD EPYC 7643 48-Core Processor, Python 3.6.8
See https://gist.github.com/jfgrimm/832d0854657a8ac8eba22dca4990d3c2 for a full test report.

jfgrimm · 2025-06-17T14:49:10Z

Going in, thanks @branfosj!

branfosj · 2025-06-17T14:50:18Z

Test report by @branfosj
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/6fed4addff316f80043f2c24be96c6d4 for a full test report.

add zlib depenendency to Serf

b83fdb9

github-actions Bot added the change label Jun 17, 2025

branfosj mentioned this pull request Jun 17, 2025

switch CESM-deps to use latest git-lfs #23115

Merged

1 task

point scons at zlib

f2034fa

branfosj closed this Jun 17, 2025

jfgrimm reopened this Jun 17, 2025

re-add zlib dependency

50b7f2c

branfosj commented Jun 17, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/s/Serf/Serf-1.3.9-GCCcore-11.3.0.eb Outdated

fix zlib version

8bbb142

override CPPFLAGS

2d0daa5

add missing "

feb5b4c

branfosj commented Jun 17, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/s/Serf/Serf-1.3.9-GCCcore-11.3.0.eb Outdated

all the flags

33d2b34

branfosj commented Jun 17, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/s/Serf/Serf-1.3.9-GCCcore-11.3.0.eb Outdated

Comment thread easybuild/easyconfigs/s/Serf/Serf-1.3.9-GCCcore-11.2.0.eb Outdated

Comment thread easybuild/easyconfigs/s/Serf/Serf-1.3.9-GCCcore-10.3.0.eb Outdated

flags

bdd1821

jfgrimm added bug fix and removed change labels Jun 17, 2025

jfgrimm added this to the next release (5.1.1?) milestone Jun 17, 2025

jfgrimm approved these changes Jun 17, 2025

View reviewed changes

jfgrimm merged commit 44d2706 into easybuilders:develop Jun 17, 2025
8 checks passed

jfgrimm changed the title ~~add zlib depenendency to Serf~~ add zlib dependency to Serf Jun 17, 2025

branfosj deleted the 20250617130159_new_pr_Serf139 branch June 17, 2025 14:52

boegel changed the title ~~add zlib dependency to Serf~~ add missing zlib dependency to Serf Jul 5, 2025

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