{vis}[intel/2016a] p4vasp 0.3.29 (REVIEW) by boegel · Pull Request #2328 · easybuilders/easybuild-easyconfigs

boegel · 2016-01-15T12:59:21Z

(replacement for #2086)

edit: requires ~~#2628~~, #2631

hpcugentbot · 2016-01-15T14:28:32Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/5672/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

boegel · 2016-01-15T17:36:44Z

(continuing where I left off in #2086) Although the build of p4vasp works, trying to use it fails on import gtk failing.
The output of PyGTK's ./configure suggests that gtk+ is missing as a dependency, so I added that, making sure there's no conflict on the GLib version.

However, this doesn't work, because GLib 2.29.92 is too old for this version of gtk+ (or at least, for some of its dependencies, e.g. gdk-pixbuf).

To be continued...

ocaisa · 2016-02-04T16:43:07Z

I've solved this by following what homebrew does, working on the PR now (but not including VASP)

ocaisa · 2016-02-05T09:07:43Z

Updated PyGTK PR for intel/2016a at #2443

boegel · 2016-02-05T18:20:35Z

This can be closed as is if #2443 works out... Thanks @ocaisa!

boegel · 2016-02-09T14:33:32Z

Well, not closed, updated to use the PyGTK from #2443 :)

boegel · 2016-02-10T19:08:13Z

@wpoely86: please review?

boegel · 2016-02-10T19:10:22Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/37701f96d7440083812f for a full test report.

hpcugentbot · 2016-02-10T19:40:14Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6070/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

hpcugentbot · 2016-02-10T19:43:56Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6071/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

wpoely86 · 2016-02-11T08:25:06Z

+modextrapaths = {
+    'CPATH': ['p4vasp/include'],
+    'LIBRARY_PATH': ['p4vasp/lib'],
+    'PATH': ['p4vasp/bin'],


aren't these picked up automatically?

no, they're in a p4vasp subdir...

boegel · 2016-02-12T07:46:31Z

still several missing pieces: Glade, PyOpenGL, ...

cfr:

$ p4v
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/bin/p4v.py", line 225, in createFrame
    xml=p4vasp.util.loadGlade(self.gladefile,self.gladename)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/util.py", line 494, in loadGlade
    import gtk.glade
ImportError: No module named glade
ERROR : Unable to create Glade object from frame.glade, frame_box
Searching for applets
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 106, in findApplets
    o=getClass(c)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 77, in getClass
    exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
  File "<string>", line 1, in <module>
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/KpointsViewerApplet.py", line 26, in <module>
    from p4vasp.paint3d.OpenGLPaint3D import *
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/paint3d/OpenGLPaint3D.py", line 5, in <module>
    from OpenGL.GL import *
ImportError: No module named OpenGL.GL
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 106, in findApplets
    o=getClass(c)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 77, in getClass
    exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
  File "<string>", line 1, in <module>
ImportError: No module named buggy
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 106, in findApplets
    o=getClass(c)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 77, in getClass
    exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
  File "<string>", line 1, in <module>
ImportError: No module named mymod
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 106, in findApplets
    o=getClass(c)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 77, in getClass
    exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
  File "<string>", line 1, in <module>
ImportError: No module named foldx
Traceback (most recent call last):
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 106, in findApplets
    o=getClass(c)
  File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/__init__.py", line 77, in getClass
    exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
  File "<string>", line 1
    import 5.3.2.5.3
             ^
SyntaxError: invalid syntax

ocaisa · 2016-02-12T08:09:57Z

This will give you the build recipe for glade:
https://github.com/Homebrew/homebrew/blob/749acf67a98627cb0e2bbafe5a07c77a244e9e26/Library/Formula/glade.rb

I think PyOpenGL might be a tough one.

On 12 February 2016 at 08:46, Kenneth Hoste <[email protected]mailto:[email protected]> wrote:

still several missing pieces: Glade, PyOpenGL, ...

cfr:

$ p4v
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/bin/p4v.py", line 225, in createFrame
xml=p4vasp.util.loadGlade(self.gladefile,self.gladename)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/util.py", line 494, in loadGlade
import gtk.glade
ImportError: No module named glade
ERROR : Unable to create Glade object from frame.glade, frame_box
Searching for applets
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 106, in findApplets
o=getClass(c)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 77, in getClass
exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
File "", line 1, in
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/KpointsViewerApplet.py", line 26, in
from p4vasp.paint3d.OpenGLPaint3D import *
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/paint3d/OpenGLPaint3D.py", line 5, in
from OpenGL.GL import *
ImportError: No module named OpenGL.GL
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 106, in findApplets
o=getClass(c)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 77, in getClass
exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
File "", line 1, in
ImportError: No module named buggy
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 106, in findApplets
o=getClass(c)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 77, in getClass
exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
File "", line 1, in
ImportError: No module named mymod
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 106, in findApplets
o=getClass(c)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 77, in getClass
exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
File "", line 1, in
ImportError: No module named foldx
Traceback (most recent call last):
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 106, in findApplets
o=getClass(c)
File "/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/p4vasp/0.3.29-intel-2016a-Python-2.7.11/p4vasp/python-packages/p4vasp/applet/init.py", line 77, in getClass
exec "import %s\nc=%s\n"%(join(v[:-1],"."),c)
File "", line 1
import 5.3.2.5.3
^
SyntaxError: invalid syntax

—
Reply to this email directly or view it on GitHubhttps://github.com//pull/2328#issuecomment-183219137.

Dr. Alan O'Cais
Application Support
Juelich Supercomputing Centre
Forschungszentrum Juelich GmbH
52425 Juelich, Germany

Phone: +49 2461 61 5213
Fax: +49 2461 61 6656
E-mail: [email protected]:[email protected]
WWW: http://www.fz-juelich.de/ias/jsc/EN

Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,

Prof. Dr. Sebastian M. Schmidt

boegel · 2016-02-12T08:15:12Z

Test report by @boegel
SUCCESS
Build succeeded for 26 out of 26 (1 easyconfigs in this PR)
Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/173ec612556bd910319b for a full test report.

boegel · 2016-03-04T13:29:38Z

@ocaisa: PyOpenGL was pretty easy (cfr. #2628), Glade is tackled in #2631

boegel · 2016-03-04T16:56:43Z

p4v now works on top of PyOpenGL (#2628) and Glade (#2631)... \o/

boegel · 2016-03-04T17:15:40Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2151.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/8d65fe4671a9384c14c9 for a full test report.

hpcugentbot · 2016-03-04T17:15:42Z

Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6805/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

boegel · 2016-03-04T17:27:59Z

Jenkins: test this please

boegel · 2016-03-04T17:33:20Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2668.swalot.os - Linux centos linux 7.2.1511, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/941f9f22c06cb581c517 for a full test report.

hpcugentbot · 2016-03-04T17:43:28Z

Easyconfigs unit test suite PASSed (see https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/6807/console for more details).

This pull request is now ready for review/testing.

Please try and find someone who can tackle this; contact @boegel if you're not sure what to do.

boegel · 2016-03-04T17:48:33Z

Going in, thanks for the feedback everyone!

{vis}[intel/2016a] p4vasp 0.3.29 (REVIEW)

boegel added 7 commits October 27, 2015 11:01

{vis}[intel/2015b] p4vasp 0.3.29

494cc57

add PyGTK dep in p4vasp easyconfig

3dcf130

add comment to patch for GObject-Introspection

84d3505

fix versionsuffix for GObject-Introspection

a533eb7

Merge branch 'develop' into p4vasp0329_intel2015b

398754b

switch to GLib 2.29.92 and PyGObject 2.28.6

668e7a2

Merge branch 'develop' into p4vasp0329_intel2015b

894c4fd

boegel added this to the v2.6.0 milestone Jan 15, 2016

boegel mentioned this pull request Jan 15, 2016

{vis}[intel/2015b] p4vasp 0.3.29 + PyGTK 2.24.0 (WIP) #2086

Closed

add 'import gtk' as sanity check in PyGTK easyconfig, add gtk+ as dep

9396f05

boegel modified the milestones: v2.6.0, v2.7.0 Jan 23, 2016

Merge branch 'develop' into p4vasp0329_intel2015b

211cc11

boegel changed the title ~~{vis}[intel/2015b] p4vasp 0.3.29 + PyGTK 2.24.0 (WIP)~~ {vis}[intel/2016a] p4vasp 0.3.29 (WIP) Feb 10, 2016

rework p4vasp to use intel/2016a and easyconfigs from easybuilders#2443

7580fb2

boegel force-pushed the p4vasp0329_intel2015b branch from 2f9fb3a to 7580fb2 Compare February 10, 2016 19:06

boegel changed the title ~~{vis}[intel/2016a] p4vasp 0.3.29 (WIP)~~ {vis}[intel/2016a] p4vasp 0.3.29 (REVIEW) Feb 11, 2016

wpoely86 reviewed Feb 11, 2016
View reviewed changes

boegel changed the title ~~{vis}[intel/2016a] p4vasp 0.3.29 (REVIEW)~~ {vis}[intel/2016a] p4vasp 0.3.29 (WIP) Feb 12, 2016

boegel added 2 commits March 4, 2016 14:36

Merge branch 'develop' into p4vasp0329_intel2015b

593dcc4

add PyOpenGL and Glade as deps for p4vasp

7a43b7c

boegel changed the title ~~{vis}[intel/2016a] p4vasp 0.3.29 (WIP)~~ {vis}[intel/2016a] p4vasp 0.3.29 (REVIEW) Mar 4, 2016

boegel added a commit that referenced this pull request Mar 4, 2016

Merge pull request #2328 from boegel/p4vasp0329_intel2015b

e8c33b9

{vis}[intel/2016a] p4vasp 0.3.29 (REVIEW)

boegel merged commit e8c33b9 into easybuilders:develop Mar 4, 2016

boegel deleted the p4vasp0329_intel2015b branch March 4, 2016 17:48

Conversation

boegel commented Jan 15, 2016

Uh oh!

hpcugentbot commented Jan 15, 2016

Uh oh!

boegel commented Jan 15, 2016

Uh oh!

ocaisa commented Feb 4, 2016

Uh oh!

ocaisa commented Feb 5, 2016

Uh oh!

boegel commented Feb 5, 2016

Uh oh!

boegel commented Feb 9, 2016

Uh oh!

boegel commented Feb 10, 2016

Uh oh!

boegel commented Feb 10, 2016

Uh oh!

hpcugentbot commented Feb 10, 2016

Uh oh!

hpcugentbot commented Feb 10, 2016

Uh oh!

wpoely86 Feb 11, 2016

Choose a reason for hiding this comment

Uh oh!

boegel Feb 11, 2016

Choose a reason for hiding this comment

Uh oh!

boegel commented Feb 12, 2016

Uh oh!

ocaisa commented Feb 12, 2016

Prof. Dr. Sebastian M. Schmidt

Uh oh!

boegel commented Feb 12, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

hpcugentbot commented Mar 4, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

hpcugentbot commented Mar 4, 2016

Uh oh!

boegel commented Mar 4, 2016

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants