{geo}[foss/2024a] pyOpenRiverCam v0.8.6 by WilleBell · Pull Request #23540 · easybuilders/easybuild-easyconfigs

WilleBell · 2025-07-30T16:21:12Z

(created using eb --new-pr)

Depends on:

{vis}[GCC/13.3.0,GCCcore/13.3.0] OpenCV v4.11.0, GTK4 v4.17.1, GST-plugins-bad v1.24.8, ... w/ contrib #23539

…b, rasterio-1.3.11-foss-2024a.eb

github-actions · 2025-07-30T16:21:38Z

Updated software `rasterio-1.3.11-foss-2024a.eb`

Diff against rasterio-1.4.3-foss-2024a.eb

easybuild/easyconfigs/r/rasterio/rasterio-1.4.3-foss-2024a.eb

diff --git a/easybuild/easyconfigs/r/rasterio/rasterio-1.4.3-foss-2024a.eb b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
index fc19986db7..a5041dc25f 100644
--- a/easybuild/easyconfigs/r/rasterio/rasterio-1.4.3-foss-2024a.eb
+++ b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'rasterio'
-version = '1.4.3'
+version = '1.3.11'
 
 homepage = 'https://github.com/mapbox/rasterio'
 description = "Rasterio reads and writes geospatial raster data."
@@ -30,9 +30,12 @@ exts_list = [
     ('cligj', '0.7.2', {
         'checksums': ['a4bc13d623356b373c2c27c53dbd9c68cae5d526270bfa71f6c6fa69669c6b27'],
     }),
+    ('snuggs', '1.4.7', {
+        'checksums': ['501cf113fe3892e14e2fee76da5cd0606b7e149c411c271898e6259ebde2617b'],
+    }),
     (name, version, {
-        'checksums': ['201f05dbc7c4739dacb2c78a1cf4e09c0b7265b0a4d16ccbd1753ce4f2af350a'],
         'use_pip_extras': 'plot,s3',
+        'checksums': ['47aa70b4718ebc80d825bb7db3127577d74e31c53048ce215145c0baf530ece9'],
     }),
 ]

Diff against rasterio-1.3.9-foss-2023a.eb

easybuild/easyconfigs/r/rasterio/rasterio-1.3.9-foss-2023a.eb

diff --git a/easybuild/easyconfigs/r/rasterio/rasterio-1.3.9-foss-2023a.eb b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
index d363e2b419..a5041dc25f 100644
--- a/easybuild/easyconfigs/r/rasterio/rasterio-1.3.9-foss-2023a.eb
+++ b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
@@ -1,20 +1,23 @@
 easyblock = 'PythonBundle'
 
 name = 'rasterio'
-version = '1.3.9'
+version = '1.3.11'
 
 homepage = 'https://github.com/mapbox/rasterio'
 description = "Rasterio reads and writes geospatial raster data."
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('Cython', '3.0.10'),
+]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Python-bundle-PyPI', '2023.06'),
-    ('SciPy-bundle', '2023.07'),
-    ('GDAL', '3.7.1'),
-    ('matplotlib', '3.7.2'),  # plot extra
-    ('boto3', '1.28.70'),  # s3 extra
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('GDAL', '3.10.0'),
+    ('matplotlib', '3.9.2'),  # plot extra
+    ('boto3', '1.35.36'),  # s3 extra
 ]
 
 exts_list = [
@@ -32,7 +35,7 @@ exts_list = [
     }),
     (name, version, {
         'use_pip_extras': 'plot,s3',
-        'checksums': ['fc6d0d290492fa1a5068711cfebb21cc936968891b7ed9da0690c8a7388885c5'],
+        'checksums': ['47aa70b4718ebc80d825bb7db3127577d74e31c53048ce215145c0baf530ece9'],
     }),
 ]

Diff against rasterio-1.3.8-foss-2022b.eb

easybuild/easyconfigs/r/rasterio/rasterio-1.3.8-foss-2022b.eb

diff --git a/easybuild/easyconfigs/r/rasterio/rasterio-1.3.8-foss-2022b.eb b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
index 4844062993..a5041dc25f 100644
--- a/easybuild/easyconfigs/r/rasterio/rasterio-1.3.8-foss-2022b.eb
+++ b/easybuild/easyconfigs/r/rasterio/rasterio-1.3.11-foss-2024a.eb
@@ -1,19 +1,23 @@
 easyblock = 'PythonBundle'
 
 name = 'rasterio'
-version = '1.3.8'
+version = '1.3.11'
 
 homepage = 'https://github.com/mapbox/rasterio'
 description = "Rasterio reads and writes geospatial raster data."
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('Cython', '3.0.10'),
+]
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('SciPy-bundle', '2023.02'),
-    ('GDAL', '3.6.2'),
-    ('matplotlib', '3.7.0'),  # plot extra
-    ('boto3', '1.26.163'),  # s3 extra
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('GDAL', '3.10.0'),
+    ('matplotlib', '3.9.2'),  # plot extra
+    ('boto3', '1.35.36'),  # s3 extra
 ]
 
 exts_list = [
@@ -31,7 +35,7 @@ exts_list = [
     }),
     (name, version, {
         'use_pip_extras': 'plot,s3',
-        'checksums': ['ffdd18e78efdf8ad5861065fd812a66dd34264293317ff6540a078ea891cdef8'],
+        'checksums': ['47aa70b4718ebc80d825bb7db3127577d74e31c53048ce215145c0baf530ece9'],
     }),
 ]

WilleBell · 2025-07-31T10:04:33Z

Test report by @WilleBell
SUCCESS
Build succeeded for 7 out of 7 (7 easyconfigs in total)
node707.hydra.os - Linux Rocky Linux 9.5, x86_64, AMD EPYC 9535 64-Core Processor, Python 3.9.21
See https://gist.github.com/WilleBell/d329e106f5b5151f2133b4f74a31e608 for a full test report.

…asyconfigs into 20250730182108_new_pr_pyOpenRiverCam086

Crivella · 2025-08-05T10:06:14Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-08-05T10:10:09Z

@Crivella: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23540 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23540 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7491

Test results coming soon (I hope)...

Details

- notification for comment with ID 3154532189 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-08-05T10:27:43Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/3dccd56ef8feee799105ba0fc01b30fa for a full test report.

Crivella · 2025-08-05T11:32:52Z

Missing modules

Test report by @Crivella
FAILED
Build succeeded for 1 out of 5 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/6a01d0f8629a946e5b2ada1053b407c0 for a full test report.

Crivella · 2025-08-05T13:16:33Z

Test report by @Crivella
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/e5b318cb7e14dae53b764537ede00a8f for a full test report.

Crivella · 2025-08-05T13:19:49Z

found 2 variants of 'rasterio' dependency in easyconfigs using '2024a' toolchain generation
* version: 1.3.11; versionsuffix:  as dep for {'pyOpenRiverCam-0.8.6-foss-2024a-rasterio-1.3.11.eb'}
* version: 1.4.3; versionsuffix:  as dep for {'rioxarray-0.19.0-foss-2024a.eb', 'r5py-1.0.6-foss-2024a-Java-21.eb'}

I guess we should try and see if pyOpenRiverCam could work with the version we already have, otherwise this PR also needs to add an exception in

easybuild-easyconfigs/test/easyconfigs/easyconfigs.py

Lines 552 to 557 in e6f9eba

    
           # some software packages require a specific (older/newer) version of a particular dependency 
        
           alt_dep_versions = { 
        
               # arrow-R 6.0.0.2 is used for two R/R-bundle-Bioconductor sets (4.1.2/3.14 and 4.2.0/3.15) 
        
               'arrow-R': [('6.0.0.2', [r'R-bundle-Bioconductor-'])], 
        
               # BRAKER 3.0.8 depends on AUGUSTUS 3.5.0-20240612 
        
               'AUGUSTUS': [(r'3\.5\.0-20240612', [r'BRAKER-3\.0\.8'])],

WilleBell · 2025-08-18T13:00:18Z

found 2 variants of 'rasterio' dependency in easyconfigs using '2024a' toolchain generation
* version: 1.3.11; versionsuffix:  as dep for {'pyOpenRiverCam-0.8.6-foss-2024a-rasterio-1.3.11.eb'}
* version: 1.4.3; versionsuffix:  as dep for {'rioxarray-0.19.0-foss-2024a.eb', 'r5py-1.0.6-foss-2024a-Java-21.eb'}
I guess we should try and see if pyOpenRiverCam could work with the version we already have, otherwise this PR also needs to add an exception in

easybuild-easyconfigs/test/easyconfigs/easyconfigs.py

Lines 552 to 557 in e6f9eba

# some software packages require a specific (older/newer) version of a particular dependency

alt_dep_versions = {

# arrow-R 6.0.0.2 is used for two R/R-bundle-Bioconductor sets (4.1.2/3.14 and 4.2.0/3.15)

'arrow-R': [('6.0.0.2', [r'R-bundle-Bioconductor-'])],

# BRAKER 3.0.8 depends on AUGUSTUS 3.5.0-20240612

'AUGUSTUS': [(r'3\.5\.0-20240612', [r'BRAKER-3\.0\.8'])],

Looks like it really needs rasterio <1.4.0 (issue) . rasterio is now included as an extension.

WilleBell · 2025-08-18T13:00:33Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-08-18T13:10:15Z

@WilleBell: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23540 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23540 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7642

Test results coming soon (I hope)...

Details

- notification for comment with ID 3196715262 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

WilleBell · 2025-08-18T13:17:39Z

Test report by @WilleBell
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node741.hydra.os - Linux Rocky Linux 9.5, x86_64, AMD EPYC 9535 64-Core Processor, Python 3.9.21
See https://gist.github.com/WilleBell/f78b612b3682aff8ad681e24227dcb8c for a full test report.

…asyconfigs into 20250730182108_new_pr_pyOpenRiverCam086

boegelbot · 2025-08-18T13:28:18Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/952bc5c3e4132873d3a8c17e41083d5f for a full test report.

Crivella · 2025-08-25T09:16:00Z

Test report by @Crivella
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/1c841639179a723e03e7cc559014e638 for a full test report.

Crivella

LGTM

Crivella · 2025-08-25T09:21:55Z

Going in, thanks @WilleBell!

adding easyconfigs: pyOpenRiverCam-0.8.6-foss-2024a-rasterio-1.3.11.e…

de80d91

…b, rasterio-1.3.11-foss-2024a.eb

WilleBell added new update labels Jul 30, 2025

Thyre added the 2024a issues & PRs related to 2024a common toolchains label Aug 1, 2025

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

38abad1

…asyconfigs into 20250730182108_new_pr_pyOpenRiverCam086

move rasterio to ext to avoid exception in EB tests

72cd77f

github-actions Bot removed the update label Aug 18, 2025

WilleBell changed the title ~~{geo}[foss/2024a] pyOpenRiverCam v0.8.6, rasterio v1.3.11 w/ rasterio 1.3.11~~ {geo}[foss/2024a] pyOpenRiverCam v0.8.6 Aug 18, 2025

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

4f16438

…asyconfigs into 20250730182108_new_pr_pyOpenRiverCam086

Crivella approved these changes Aug 25, 2025

View reviewed changes

Crivella added this to the next release (5.1.2) milestone Aug 25, 2025

Crivella merged commit 2ecd8ca into easybuilders:develop Aug 25, 2025
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github-actions Bot commented Jul 30, 2025

Updated software rasterio-1.3.11-foss-2024a.eb

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WilleBell commented Jul 31, 2025

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WilleBell commented Jul 30, 2025 •

edited

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Updated software `rasterio-1.3.11-foss-2024a.eb`

Crivella commented Aug 5, 2025 •

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