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add patch to update sse2neon.h in RAxML 8.2.13 sources#24627

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verdurin merged 1 commit intoeasybuilders:developfrom
ocaisa:20251119120431_new_pr_RAxML8213
Nov 19, 2025
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add patch to update sse2neon.h in RAxML 8.2.13 sources#24627
verdurin merged 1 commit intoeasybuilders:developfrom
ocaisa:20251119120431_new_pr_RAxML8213

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@ocaisa ocaisa commented Nov 19, 2025 •
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RAxML ships with an old version of sse2neon.h which has problems with "recent" GCC compilers (as evidenced by the failure to build in EESSI, EESSI/software-layer#1196 (comment)).

This PR updates the included header file to a Sept. 2025 version.

@github-actions github-actions Bot added 2023a 2023b 2024a issues & PRs related to 2024a common toolchains change labels Nov 19, 2025
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ocaisa commented Nov 19, 2025

@boegelbot please test @ jsc-zen3

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boegelbot commented Nov 19, 2025

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24627 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24627 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8836

Test results coming soon (I hope)...

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boegelbot commented Nov 19, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (total: 2 mins 0 secs) (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/334eecd6f7a933063d70bf02413504f3 for a full test report.

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verdurin commented Nov 19, 2025

Test report by @verdurin
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10 (Green Obsidian), x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.11.13
See https://gist.github.com/verdurin/abe8473949c52cd101b0e1a62eb36b5a for a full test report.

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verdurin approved these changes Nov 19, 2025
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Looks fine.

@verdurin verdurin added this to the next release (5.2.0?) milestone Nov 19, 2025
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verdurin commented Nov 19, 2025

Going in, thanks @ocaisa!

@verdurin verdurin merged commit 930611b into easybuilders:develop Nov 19, 2025
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@boegel boegel added bug fix aarch64 Related to Arm 64-bit (aarch64) and removed change labels Nov 19, 2025
@boegel boegel changed the title Update sse2neon.h in RAxML 8.2.13 sources add patch to update sse2neon.h in RAxML 8.2.13 sources Nov 19, 2025
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2023a 2023b 2024a issues & PRs related to 2024a common toolchains aarch64 Related to Arm 64-bit (aarch64) bug fix

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