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don't depend on ScaFaCos in LAMMPS easyconfigs when building on Arm + add patch to disable failing test on Arm due to bug in kim-api#25133

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ocaisa merged 16 commits intoeasybuilders:developfrom
laraPPr:20260123125659_new_pr_LAMMPS22Jul2025
Mar 18, 2026
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don't depend on ScaFaCos in LAMMPS easyconfigs when building on Arm + add patch to disable failing test on Arm due to bug in kim-api#25133
ocaisa merged 16 commits intoeasybuilders:developfrom
laraPPr:20260123125659_new_pr_LAMMPS22Jul2025

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@laraPPr laraPPr commented Jan 23, 2026

@github-actions github-actions Bot added 2023a 2023b 2024a issues & PRs related to 2024a common toolchains change labels Jan 23, 2026
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laraPPr commented Jan 23, 2026

@boegelbot please test @ jsc-zen3 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos.eb LAMMPS-29Aug2024-foss-2023b-kokkos.eb LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb"

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laraPPr commented Jan 23, 2026

@boegelbot please test @ jsc-zen3-a100 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb "

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@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25133 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb " EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25133 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9471

Test results coming soon (I hope)...

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laraPPr commented Jan 23, 2026

Test report by @laraPPr
FAILED
Build succeeded for 2 out of 4 (total: 1 hour 7 mins 53 secs) (4 easyconfigs in total)
node3595.doduo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 7552 48-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/f8aafa3668bdb7e773481da3e1105b66 for a full test report.

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Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (total: 3 hours 55 mins 8 secs) (3 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 590.44.01, Python 3.9.23
See https://gist.github.com/boegelbot/4543591eb762c2776d93db24ac8c75a8 for a full test report.

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laraPPr commented Jan 27, 2026

@boegelbot please test @ jsc-zen3 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos.eb LAMMPS-29Aug2024-foss-2023b-kokkos.eb LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb"

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@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25133 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos.eb LAMMPS-29Aug2024-foss-2023b-kokkos.eb LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25133 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9500

Test results coming soon (I hope)...

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laraPPr commented Jan 27, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 3 out of 3 (total: 2 hours 1 min 57 secs) (3 easyconfigs in total)
node4303.litleo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 9454P 48-Core Processor, 1 x NVIDIA NVIDIA H100 NVL, 580.95.05, Python 3.9.21
See https://gist.github.com/laraPPr/e8e33a90581dce34bc1f8f1f0cff41e5 for a full test report.

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laraPPr commented Jan 27, 2026

@boegelbot please test @ jsc-zen3-a100 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb "

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@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25133 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb " EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25133 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9502

Test results coming soon (I hope)...

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Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (total: 2 hours 11 mins 38 secs) (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.23
See https://gist.github.com/boegelbot/c055116a35c1b77443a6d996d55b744a for a full test report.

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laraPPr commented Jan 28, 2026

@boegelbot please test @ jsc-zen3-a100 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb"

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@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25133 EB_ARGS="LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb LAMMPS-29Aug2024_update2-foss-2023b-kokkos-CUDA-12.4.0.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos-CUDA-12.6.0.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25133 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9522

Test results coming soon (I hope)...

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boegel commented Jan 29, 2026

GPU node is busy currently chewing on PyTorch.

I've canceled job 9522 to avoid duplicate test for this PR, job 9502 should come back with a result soonish for this PR...

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laraPPr commented Jan 29, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 4 out of 4 (total: 1 hour 7 mins 9 secs) (4 easyconfigs in total)
node3624.doduo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 7552 48-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/360b7809700cb33369472c58f4094f59 for a full test report.

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Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (total: 3 hours 58 mins 14 secs) (3 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 590.44.01, Python 3.9.23
See https://gist.github.com/boegelbot/c4cda1bac2c00e6c954a61189a0d161b for a full test report.

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laraPPr commented Feb 6, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 4 out of 4 (total: 1 hour 16 mins 29 secs) (4 easyconfigs in total)
node3507.doduo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 7552 48-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/680d0631b8f0ba46f70329ceac3ab331 for a full test report.

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laraPPr commented Feb 6, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 3 out of 3 (total: 1 hour 58 mins 44 secs) (3 easyconfigs in total)
node4308.litleo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 9454P 48-Core Processor, 1 x NVIDIA NVIDIA H100 NVL, 580.95.05, Python 3.9.21
See https://gist.github.com/laraPPr/19810b678ac36fae2cae173b4de21d89 for a full test report.

Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-22Jul2025-foss-2024a-kokkos.eb Outdated
Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-29Aug2024-foss-2023b-kokkos.eb Outdated
Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb Outdated
Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb Outdated
Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-22Jul2025-foss-2024a-kokkos-CUDA-12.6.0.eb Outdated
update comments

Co-authored-by: Loris Ercole <[email protected]>
@boegel boegel self-requested a review February 16, 2026 08:42
@boegel boegel changed the title Remove ScaFaCos from LAMMPS dependencies when building on ARM don't depend on ScaFaCos in LAMMPS easyconfigs when building on Arm + add patch to disable failing test on Arm due to bug in kim-api Feb 16, 2026
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laraPPr commented Feb 26, 2026

Test report by @laraPPr SUCCESS Build succeeded for 4 out of 4 (total: 1 hour 19 mins 11 secs) (4 easyconfigs in total) aarch64-neoverse-n1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_n1), Python 3.13.4 See https://gist.github.com/laraPPr/9c853635347585f3519badbb00751605 for a full test report.

@boegel was still seeing failures when he was testing it on ARM but the ones I rebuild yesterday passed with the kim-api patch.

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boegel commented Feb 27, 2026

Test report by @boegel
FAILED
Build succeeded for 0 out of 2 (total: 3 hours 42 mins 26 secs) (2 easyconfigs in total)
aarch64-neoverse-v1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_v1), Python 3.6.8
See https://gist.github.com/boegel/cd9bbc7d6656c37709ec63777bf6d079 for a full test report.

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laraPPr commented Mar 2, 2026

The problem that @boegel is hitting is on neoverse-v1 while it is now ok for neoverse-n1. I'll investigate the problem on the other ARM target.

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boegel commented Mar 16, 2026

Test report by @boegel FAILED Build succeeded for 0 out of 2 (total: 3 hours 42 mins 26 secs) (2 easyconfigs in total) aarch64-neoverse-v1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_v1), Python 3.6.8 See https://gist.github.com/boegel/cd9bbc7d6656c37709ec63777bf6d079 for a full test report.

The following tests FAILED:
	 45 - KimCommands (Subprocess aborted)
	478 - FixTimestep:deform_tri (Failed)
	533 - FixTimestep:rigid_nvt (Failed)
Errors while running CTest

failing KimCommands is because I didn't rebuild kim_api

433/545 Test #478: FixTimestep:deform_tri ........................***Failed    1.22 sec
No PMIx server was reachable, but a PMI1/2 was detected.
If srun is being used to launch application,  16 singletons will be started.
[==========] Running 2 tests from 1 test suite.
[----------] Global test environment set-up.
[----------] 2 tests from FixTimestep
[ RUN      ] FixTimestep.plain
/tmp/boegel/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/lammps-stable_29Aug2024_update2/unittest/force-styles/test_main.cpp:98: Failure
Expected: (err) <= (epsilon)
  Actual: 1.218982305409077e-12 vs 4.9999999999999999e-13
Google Test trace:
/tmp/boegel/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/lammps-stable_29Aug2024_update2/unittest/force-styles/test_main.cpp:90: EXPECT_VELOCITIES: run_vel (normal run, verlet)
[  FAILED  ] FixTimestep.plain (13 ms)
487/545 Test #533: FixTimestep:rigid_nvt .........................***Failed    1.22 sec
No PMIx server was reachable, but a PMI1/2 was detected.
If srun is being used to launch application,  16 singletons will be started.
[==========] Running 2 tests from 1 test suite.
[----------] Global test environment set-up.
[----------] 2 tests from FixTimestep
[ RUN      ] FixTimestep.plain
[       OK ] FixTimestep.plain (6 ms)
[ RUN      ] FixTimestep.omp
/tmp/boegel/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/lammps-stable_29Aug2024_update2/unittest/force-styles/test_main.cpp:97: Failure
Expected: (err) <= (epsilon)
  Actual: 1.0180329381098362e-12 vs 9.9999999999999998e-13
Google Test trace:
/tmp/boegel/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/lammps-stable_29Aug2024_update2/unittest/force-styles/test_main.cpp:90: EXPECT_VELOCITIES: run_vel (normal run, verlet)
[  FAILED  ] FixTimestep.omp (9 ms)
[----------] 2 tests from FixTimestep (15 ms total)

[----------] Global test environment tear-down
[==========] 2 tests from 1 test suite ran. (15 ms total)
[  PASSED  ] 1 test.
[  FAILED  ] 1 test, listed below:
[  FAILED  ] FixTimestep.omp

 1 FAILED TEST

edit: we may need to introduce this to ensure sufficient floating-point accuracy:

toolchainopts = {'strict': True}

Maybe only when building for Arm?

if ARCH == 'aarch64':
    toolchainopts['strict'] = True

Or in the LAMMPS easyblock more fine-grained, only on Arm CPUs that support SVE

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boegel commented Mar 16, 2026

Quick update from my side: same problem with FixTimestep tests when strict toolchain option is enabled...

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yeah I'm not too surprised, those thresholds are very tight. For many tests they were already increased upstream to make them pass on ARM, but some might have slipped through... they are very small differences.
So I suggest we make a patch, like we did in #23719

Comment thread easybuild/easyconfigs/l/LAMMPS/LAMMPS-22Jul2025-foss-2024a-kokkos.eb Outdated
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laraPPr commented Mar 17, 2026

Test report by @laraPPr
FAILED
Build succeeded for 1 out of 2 (total: 59 mins 22 secs) (2 easyconfigs in total)
aarch64-neoverse-v1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_v1), Python 3.13.4
See https://gist.github.com/laraPPr/574fab882e60418ab13bb55596e40b51 for a full test report.

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laraPPr commented Mar 17, 2026

@ocaisa @boegel it now passed for the version that we want to get in EESSI with the patch to have it also pass for the older version. I'll have to update LAMMPS-29Aug2024_unittest_fix.patch.

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laraPPr commented Mar 17, 2026

Added a patch for 29Aug2024_update2 as well

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laraPPr commented Mar 17, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 1 out of 1 (total: 29 mins 55 secs) (1 easyconfigs in total)
aarch64-neoverse-v1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_v1), Python 3.13.4
See https://gist.github.com/laraPPr/a66f8ddd25b3b7838fa439798afdfa17 for a full test report.

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laraPPr commented Mar 18, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 2 out of 2 (total: 1 hour 5 mins 31 secs) (2 easyconfigs in total)
aarch64-neoverse-v1-node1.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.10, AArch64, ARM UNKNOWN (neoverse_v1), Python 3.13.4
See https://gist.github.com/laraPPr/398add4f04ccc74ad2eb50c079465017 for a full test report.

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laraPPr commented Mar 18, 2026

@boegelbot please test @ jsc-zen3 EB_ARGS="kim-api-2.4.1-intel-compilers-2025.2.0.eb kim-api-2.4.1-GCC-14.3.0.eb kim-api-2.4.1-GCC-13.3.0.eb LAMMPS-22Jul2025-foss-2024a-kokkos.eb LAMMPS-29Aug2024-foss-2023b-kokkos.eb LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb"

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@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25133 EB_ARGS="kim-api-2.4.1-intel-compilers-2025.2.0.eb kim-api-2.4.1-GCC-14.3.0.eb kim-api-2.4.1-GCC-13.3.0.eb LAMMPS-22Jul2025-foss-2024a-kokkos.eb LAMMPS-29Aug2024-foss-2023b-kokkos.eb LAMMPS-29Aug2024_update2-foss-2023a-kokkos.eb LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25133 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10045

Test results coming soon (I hope)...

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LGTM

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Test report by @boegelbot
SUCCESS
Build succeeded for 7 out of 7 (total: 2 hours 18 mins 55 secs) (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.25
See https://gist.github.com/boegelbot/d3572b782f3cec0cfcf8678f991f4803 for a full test report.

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ocaisa commented Mar 18, 2026

Going in, thanks for seeing it through @laraPPr @lorisercole !

@ocaisa ocaisa merged commit 26461fd into easybuilders:develop Mar 18, 2026
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@boegel boegel added bug fix and removed change labels Mar 25, 2026
@boegel boegel added this to the next release (5.3.0) milestone Apr 9, 2026
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