Skip to content

{bio}[foss/2023a] BamQuery v1.0-2023-11-3#25650

Merged
laraPPr merged 1 commit intoeasybuilders:developfrom
pavelToman:20260331114307_new_pr_BamQuery102023113
Apr 8, 2026
Merged

{bio}[foss/2023a] BamQuery v1.0-2023-11-3#25650
laraPPr merged 1 commit intoeasybuilders:developfrom
pavelToman:20260331114307_new_pr_BamQuery102023113

Conversation

@pavelToman
Copy link
Copy Markdown
Collaborator

@pavelToman pavelToman commented Mar 31, 2026

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#647

@pavelToman
Copy link
Copy Markdown
Collaborator Author

@boegelbot please test @ jsc-zen3

@boegelbot
Copy link
Copy Markdown
Collaborator

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25650 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25650 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10119

Test results coming soon (I hope)...

Details

- notification for comment with ID 4161296993 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@pavelToman
Copy link
Copy Markdown
Collaborator Author

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 36 secs) (1 easyconfigs in total)
node4007.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 580.95.05, Python 3.9.21
See https://gist.github.com/pavelToman/cefc0b8425244e0527fba86f34147df7 for a full test report.

@pavelToman
Copy link
Copy Markdown
Collaborator Author

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 26 secs) (1 easyconfigs in total)
node4233.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/37eafcbb26817b8442b5aca32039a29b for a full test report.

@Thyre
Copy link
Copy Markdown
Collaborator

Thyre commented Mar 31, 2026

@boegelbot please test @ jsc-zen3

@boegelbot
Copy link
Copy Markdown
Collaborator

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25650 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25650 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10121

Test results coming soon (I hope)...

Details

- notification for comment with ID 4161770923 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Copy Markdown
Collaborator

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (total: 3 mins 18 secs) (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.25
See https://gist.github.com/boegelbot/2f3c85780249c472cf8cb3a8605e1696 for a full test report.

@laraPPr laraPPr self-assigned this Apr 8, 2026
@laraPPr
Copy link
Copy Markdown
Contributor

laraPPr commented Apr 8, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 39 secs) (1 easyconfigs in total)
node4205.shinx.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/521c86cc894b20c62edc3c19f32f1171 for a full test report.

Copy link
Copy Markdown
Contributor

@laraPPr laraPPr left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@laraPPr laraPPr added this to the next release (5.3.0) milestone Apr 8, 2026
@laraPPr
Copy link
Copy Markdown
Contributor

laraPPr commented Apr 8, 2026

Going in, thanks @pavelToman!

@laraPPr laraPPr merged commit 659ca05 into easybuilders:develop Apr 8, 2026
6 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

BAMQuery

4 participants