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{bio}[foss/2023a] BamQuery v1.0-2023-11-3#25650

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laraPPr merged 1 commit intoeasybuilders:developfrom
pavelToman:20260331114307_new_pr_BamQuery102023113
Apr 8, 2026
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{bio}[foss/2023a] BamQuery v1.0-2023-11-3#25650
laraPPr merged 1 commit intoeasybuilders:developfrom
pavelToman:20260331114307_new_pr_BamQuery102023113

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@pavelToman pavelToman commented Mar 31, 2026 •
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(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#647

@pavelToman pavelToman added the new label Mar 31, 2026
@github-actions github-actions Bot added the 2023a label Mar 31, 2026
@pavelToman pavelToman mentioned this pull request Mar 31, 2026
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pavelToman commented Mar 31, 2026

@boegelbot please test @ jsc-zen3

@pavelToman pavelToman mentioned this pull request Mar 31, 2026
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boegelbot commented Mar 31, 2026

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25650 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25650 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10119

Test results coming soon (I hope)...

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- notification for comment with ID 4161296993 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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pavelToman commented Mar 31, 2026

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 36 secs) (1 easyconfigs in total)
node4007.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 580.95.05, Python 3.9.21
See https://gist.github.com/pavelToman/cefc0b8425244e0527fba86f34147df7 for a full test report.

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pavelToman commented Mar 31, 2026

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 26 secs) (1 easyconfigs in total)
node4233.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/37eafcbb26817b8442b5aca32039a29b for a full test report.

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Thyre commented Mar 31, 2026

@boegelbot please test @ jsc-zen3

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boegelbot commented Mar 31, 2026

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25650 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25650 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 10121

Test results coming soon (I hope)...

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- notification for comment with ID 4161770923 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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boegelbot commented Mar 31, 2026

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (total: 3 mins 18 secs) (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.25
See https://gist.github.com/boegelbot/2f3c85780249c472cf8cb3a8605e1696 for a full test report.

@laraPPr laraPPr self-assigned this Apr 8, 2026
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laraPPr commented Apr 8, 2026

Test report by @laraPPr
SUCCESS
Build succeeded for 1 out of 1 (total: 6 mins 39 secs) (1 easyconfigs in total)
node4205.shinx.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/521c86cc894b20c62edc3c19f32f1171 for a full test report.

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laraPPr approved these changes Apr 8, 2026
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lgtm

@laraPPr laraPPr added this to the next release (5.3.0) milestone Apr 8, 2026
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laraPPr commented Apr 8, 2026

Going in, thanks @pavelToman!

@laraPPr laraPPr merged commit 659ca05 into easybuilders:develop Apr 8, 2026
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BAMQuery

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