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{bio}[foss/2017a] CPB v11-4-2011#5869

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migueldiascosta merged 6 commits intoeasybuilders:developfrom
Gregor-Mendel-Institute:20180221133849_new_pr_CPB1142011
Oct 3, 2019
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{bio}[foss/2017a] CPB v11-4-2011#5869
migueldiascosta merged 6 commits intoeasybuilders:developfrom
Gregor-Mendel-Institute:20180221133849_new_pr_CPB1142011

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@timeu timeu commented Feb 21, 2018

(created using eb --new-pr)

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timeu commented Feb 21, 2018

For some reason I can't add the patch with --update-pr. I get following error:

easybuild@login1:~/gmi_easyconfigs> eb --github-user timeu --update-pr 5869 --pr-commit-msg "Added Makefile to root directory to trigger sub Makefiles" CPB-11-4-2011-foss-2017a-Python-2.7.13.eb CPB-11-4-2011_makefile.patch 
== temporary log file in case of crash /tmp/eb-lFE1v6/easybuild-bLqGz6.log
Please enter password for encrypted keyring: 
== Determined branch name corresponding to easybuilders/easybuild-easyconfigs PR #5869: 20180221133849_new_pr_CPB1142011
== copying /net/gmi.oeaw.ac.at/software/mendel/easybuild-home/easybuild-clones/easybuild-easyconfigs...
== fetching branch '20180221133849_new_pr_CPB1142011' from https://github.com/Gregor-Mendel-Institute/easybuild-easyconfigs.git...
== copying easyconfigs to /tmp/eb-lFE1v6/git-working-dirRmTPlW/easybuild-easyconfigs...
== determining software names for patch files...
Matching easyconfig for CPB-11-4-2011_makefile.patch not found on the first try: scanning all easyconfigs to determine where patch file belongs (this may take a while)...
1718 of 1718 easyconfigs checked
ERROR: Failed to determine software name to which patch file CPB-11-4-2011_makefile.patch relates

Could it be that this is due to the explicit patch level ?
I will add the commit manually

Comment thread easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb Outdated
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Travis test report: 5/5 runs failed - see https://travis-ci.org/easybuilders/easybuild-easyconfigs/builds/592264535

Only showing partial log for 1st failed test suite run 17330.1;
full log at https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/592264536

...
ERROR: Test for parsing of easyconfig CPB-11-4-2011-foss-2017a-Python-2.7.13.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "<string>", line 1, in innertest
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 561, in template_easyconfig_test
    ecs = process_easyconfig(spec)
  File "/home/travis/virtualenv/python2.6.9/lib/python2.6/site-packages/easybuild/framework/easyconfig/easyconfig.py", line 1778, in process_easyconfig
    raise EasyBuildError("Failed to process easyconfig %s: %s", spec, err.msg)
EasyBuildError: "Failed to process easyconfig /home/travis/build/easybuilders/easybuild-easyconfigs/easybuild/easyconfigs/c/CPB/CPB-11-4-2011-foss-2017a-Python-2.7.13.eb: Use of 1 unknown easyconfig parameters detected in CPB-11-4-2011-foss-2017a-Python-2.7.13.eb: files_to_check\nIf these are just local variables please rename them to start with 'local_', or try using --fix-deprecated-easyconfigs to do this automatically.\nFor more information, see https://easybuild.readthedocs.io/en/latest/Easyconfig-files-local-variables.html ."

======================================================================
FAIL: Specific checks only done for the (easyconfig) files that were changed in a pull request.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 529, in test_changed_files_pull_request
    self.assertTrue(False, error_msg)
AssertionError: Failed to find parsed easyconfig for CPB-11-4-2011-foss-2017a-Python-2.7.13.eb (and could not isolate it in easyconfigs archive either)

----------------------------------------------------------------------
Ran 8404 tests in 412.233s

FAILED (failures=1, errors=1)
ERROR: Not all tests were successful.

*bleep, bloop, I'm just a bot (boegelbot v20180813.01)*Please talk to my owner @boegel if you notice you me acting stupid),or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

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Test report by @migueldiascosta
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/c5050e9178d0f32c92d4994d8923d33b for a full test report.

@migueldiascosta migueldiascosta added this to the 4.x milestone Oct 2, 2019
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Test report by @migueldiascosta
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/623a2abfd934e50736656afa886049b6 for a full test report.

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Travis test report: 5/5 runs failed - see https://travis-ci.org/easybuilders/easybuild-easyconfigs/builds/592442354

Only showing partial log for 1st failed test suite run 17360.1;
full log at https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/592442355

...
FAIL: Check the easyconfigs for style
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/styletests.py", line 61, in test_style_conformance
    self.assertEqual(result, 0, "Found code style errors (and/or warnings): %s" % result)
AssertionError: Found code style errors (and/or warnings): 1

----------------------------------------------------------------------
Ran 8410 tests in 719.792s

FAILED (failures=1)
ERROR: Not all tests were successful.

*bleep, bloop, I'm just a bot (boegelbot v20180813.01)*Please talk to my owner @boegel if you notice you me acting stupid),or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

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Going in, thanks @timeu!

@migueldiascosta migueldiascosta merged commit 5c9aa63 into easybuilders:develop Oct 3, 2019
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3 participants