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{bio}[goolf/1.4.10] CONTRAlign 2.01 (REVIEW)#690

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boegel merged 15 commits intoeasybuilders:developfrom
pescobar:contralign
Jun 1, 2016
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{bio}[goolf/1.4.10] CONTRAlign 2.01 (REVIEW)#690
boegel merged 15 commits intoeasybuilders:developfrom
pescobar:contralign

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@pescobar pescobar commented Feb 4, 2014

added the two possible "flavours" of this app and the required patch for gcc-4.7.2

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SUCCESS
Build succeeded for 2 out of 2
Linux debian 6.0.9, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/6789354db96af261c9af for a full test report.

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space after comma perhaps?

and, ''' triple quote operator above, I think would be nicer instead of """... stylistic, no worries

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@pescobar: plz follow up? this is not difficult to tune

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looks good - and PR worked, too!

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boegel commented May 18, 2014

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/f193b4f3a8a5613569da for a full test report.

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boegel commented May 18, 2014

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/cae304296c6e7d33b67a for a full test report.

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Test report by @fgeorgatos
SUCCESS
Build succeeded for 2 out of 2
Linux debian 6.0.10, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/e38efc947d671fbe6df0 for a full test report.

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Test report by @fgeorgatos
SUCCESS
Build succeeded for 2 out of 2
Linux debian 6.0.10, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/81483ad50b6f645c416e for a full test report.

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minor changes needed here, put this in REVIEW plz!

@boegel boegel changed the title CONTRAlign-2.01 goolf-1.4.10 {bio}[goolf/1.4.10] CONTRAlign 2.01 (REVIEW) Sep 23, 2015
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boegel commented Sep 23, 2015

@pescobar: will send you a PR to fix these remarks

sync with develop & fix style remarks
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boegel commented Sep 23, 2015

Jenkins: ok to test

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boegel commented Sep 23, 2015

Jenkins: test this please

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boegel commented Jan 23, 2016

Jenkins: test this please

@boegel boegel modified the milestone: v2.7.0 Jan 23, 2016
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Easyconfigs unit test suite FAILed.

See https://jenkins1.ugent.be/job/easybuild-easyconfigs-pr-builder/5805/console for more details.

Please fix the reported issues by pushing additional commits to the branch corresponding with this pull request; contact @boegel if you're not sure what to do.

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should be buildopts

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boegel commented Mar 11, 2016

@pescobar ping on remarks?

@boegel boegel modified the milestones: v2.8.0, v2.7.0 Mar 11, 2016
@boegel boegel modified the milestones: v2.8.0, v2.x May 10, 2016
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Test report by @pescobar
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in this PR)
login18.cluster.bc2.ch - Linux centos 6.5, Intel(R) Xeon(R) CPU E5620 @ 2.40GHz, Python 2.6.6
See https://gist.github.com/b1ba1324fc6289b1cdf790a2299f0ffa for a full test report.

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boegel commented May 28, 2016

@pescobar filename should be CONTRAlign-2.01-goolf-1.4.10-proteins.eb and CONTRAlign-2.01-goolf-1.4.10-rna.eb, see Travis errors

@@ -0,0 +1,21 @@
--- contralign.orig/src/Makefile 2008-08-15 03:06:30.000000000 +0200
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@pescobar please add a line of comment explaining the patch, and add yourself as an author?

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boegel commented May 28, 2016

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in this PR)
node2159.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/9db0217b573939230e7bb8ac984587a8 for a full test report.

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boegel commented May 29, 2016

@pescobar please move the easyconfig files down into the right directory...

@boegel boegel modified the milestones: v2.9.0, v2.x May 29, 2016
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boegel commented Jun 1, 2016

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in this PR)
node2160.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/bbf2479b9ecdcad3fd669c4b3b30d4fe for a full test report.

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boegel commented Jun 1, 2016

lgtm

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boegel commented Jun 1, 2016

Going in, thanks @pescobar!

@boegel boegel merged commit 615666f into easybuilders:develop Jun 1, 2016
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4 participants