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{bio}[foss/2018b] shovill 1.0.4 (+ deps) w/ Python 2.7.15#7226

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verdurin merged 8 commits intoeasybuilders:developfrom
boegel:20181130183118_new_pr_shovill100
Jan 25, 2019
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{bio}[foss/2018b] shovill 1.0.4 (+ deps) w/ Python 2.7.15#7226
verdurin merged 8 commits intoeasybuilders:developfrom
boegel:20181130183118_new_pr_shovill100

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@boegel boegel commented Nov 30, 2018 •
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(created using eb --new-pr)
requires #7225 + #7275 (SKESA)

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adding easyconfigs: shovill-1.0.0-foss-2018b-Python-2.7.15.eb, Mash-2…
0535870 
….1-foss-2018b.eb, seqtk-1.3-foss-2018b.eb, MEGAHIT-1.1.4-foss-2018b-Python-2.7.15.eb, KMC-3.1.0-foss-2018b.eb, Pilon-1.23-Java-1.8.eb, Lighter-1.1.2-foss-2018b.eb, Velvet-1.2.10-foss-2018b-mt-kmer_191.eb, CapnProto-0.7.0-GCCcore-7.3.0.eb
@boegel boegel added the update label Nov 30, 2018
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migueldiascosta commented Dec 3, 2018

Test report by @migueldiascosta
FAILED
Build succeeded for 10 out of 14 (9 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/05f09e4db354fe9a44f8c5d7a822cffd for a full test report.

@easybuilders easybuilders deleted a comment from boegelbot Dec 10, 2018
@boegel boegel added this to the 3.8.0 milestone Dec 10, 2018
@boegel boegel changed the title {bio}[foss/2018b] shovill 1.0.0 (+ deps) w/ Python 2.7.15 {bio}[foss/2018b] shovill 1.0.0 (+ deps) w/ Python 2.7.15 [WIP] Dec 10, 2018
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boegel commented Dec 10, 2018

now also requires #7275, which fixes a booboo with SKESA...

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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node3102.skitty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/7e0a927f6ae00c78ede37dc1b76a604f for a full test report.

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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node2668.swalot.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/ad1ed3199bcd96c53a269bdedf7c9e7c for a full test report.

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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node2107.delcatty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/95601d15c13e968aca2025ce039ad21d for a full test report.

@easybuilders easybuilders deleted a comment from boegelbot Dec 11, 2018
@boegel boegel changed the title {bio}[foss/2018b] shovill 1.0.0 (+ deps) w/ Python 2.7.15 [WIP] {bio}[foss/2018b] shovill 1.0.4 (+ deps) w/ Python 2.7.15 Dec 11, 2018
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boegel commented Dec 11, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node3102.skitty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/9fdcaf19f5ab741435bced01849c65fb for a full test report.

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boegel commented Dec 11, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node2613.swalot.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/52fb9451e37d15813866b729e79a6cb8 for a full test report.

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boegel commented Dec 11, 2018

Test report by @boegel
SUCCESS
Build succeeded for 10 out of 10 (10 easyconfigs in this PR)
node2082.delcatty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/557cb7929ae1fa0d967bf00284f20c39 for a full test report.

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boegel commented Dec 12, 2018

@migueldiascosta Can you try submitting a test report again? I made some changes based on your earlier (failing) test report...

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migueldiascosta commented Dec 12, 2018

Test report by @migueldiascosta
FAILED
Build succeeded for 7 out of 11 (10 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/cdffbac907af4373af66838e0e5ac39b for a full test report.

@boegel boegel modified the milestones: 3.8.0, 3.8.1 Dec 14, 2018
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boegel commented Jan 19, 2019

@migueldiascosta Is this a CentOS 6.x specific issue?

@boegel boegel modified the milestones: 3.8.1, 3.x Jan 19, 2019
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migueldiascosta commented Jan 21, 2019

@boegel seems to be another case of too old glibc (e.g. https://stackoverflow.com/a/52777686)

@migueldiascosta migueldiascosta mentioned this pull request Jan 21, 2019
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boegel commented Jan 23, 2019

Anyone else up for testing this? @verdurin maybe?

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verdurin commented Jan 25, 2019

Test report by @verdurin
SUCCESS
Build succeeded for 20 out of 20 (10 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/8d26cf48fff00131dc2f74e298e4ae6d for a full test report.

verdurin
verdurin approved these changes Jan 25, 2019
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Looks fine.

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verdurin commented Jan 25, 2019

Going in, thanks @boegel!

@verdurin verdurin merged commit e101d74 into easybuilders:develop Jan 25, 2019
@boegel boegel deleted the 20181130183118_new_pr_shovill100 branch January 25, 2019 15:02
@boegel boegel modified the milestones: 3.x, 3.8.1 Jan 25, 2019
@migueldiascosta migueldiascosta mentioned this pull request Feb 14, 2019
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