add easyconfig files for ParaStation MPI by carsten-clauss · Pull Request #759 · easybuilders/easybuild-easyconfigs

carsten-clauss · 2014-03-19T13:56:42Z

Added easyconfig files (configure/make) for ParaStation MPI with download from github (with alternative download paths via the Open ParaStation project on sourceforge / commented out by default).
ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (ParaStation MPI) which is the MPI library of choice on the JuRoPA systems of the Jülich Supercomputing Centre (JSC). ParaStation MPI is developed and maintained by ParTec Cluster Competence Center GmbH.

hpcugentbot · 2014-03-19T13:56:47Z

Automatic reply from Jenkins: Can I test this?

…eparated config folders for psmpi2 and pscom)

carsten-clauss · 2014-03-20T09:25:53Z

Okay, it seems that we need two separated config folders for psmpi2 and pscom in order to get the dependency resolving work. 5e0c6b5 should fix this issue. (psmpi2 is the actual ParaStation MPI while pscom is its low-lever communication layer)

…it excplicitly

boegel · 2014-04-02T22:52:59Z

Jenkins: ok to test

boegel · 2014-04-02T22:54:26Z

how about using:

for l in $(prefix)/lib*/lib*.so.3; do \

That would avoid breaking the Makefile on non-openSuSE systems?

Then the patch file can always be applied (it's now apply once, and once not, it should be consistent).

boegel · 2014-04-02T22:57:12Z

@carsten-clauss: thanks for the PR, and welcome to EasyBuild!

I have a couple of (rather minor) remarks, please let us know if you're up for looking into them.

carsten-clauss · 2014-04-03T11:03:15Z

@boegel: Thank you for revising the easyconfig files for ParaStation!
I have included most of your remarks (generic patch file, removed superfluous comment and empty line) and have made the sources/source_urls more generic by using the name and version parameters together with a file pattern.
Would this be okay for you?

fgeorgatos · 2014-05-16T13:33:39Z

FAILED
Build succeeded for 0 out of 3
Linux debian 6.0.9, Intel(R) Xeon(R) CPU L5640 @ 2.27GHz, Python 2.6.6
See https://gist.github.com/c57fde2d974d1e73dad5 for a full test report.

fgeorgatos · 2014-05-16T13:36:12Z

bother not with the above report, I was just trying the option --from-pr on a random system

boegel · 2014-05-16T13:48:03Z

FAILED
Build succeeded for 0 out of 3
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/c227328fba73ca282b5f for a full test report.

boegel · 2014-05-16T13:50:34Z

@carsten-clauss: build fails on my end, see test report, more specifically the following error in the build log: https://gist.github.com/boegel/034e5f649baeb6abaeda#file-pscom-5-0-43-gcc-4-8-2_partial-log-L486

/usr/bin/ld: cannot find -lpopt

Does that ring a bell for you? Missing library?

add missing popt dependency for pscomp, fix psmpi2 patch file, style fixes

boegel · 2014-05-19T08:40:38Z

@carsten-clauss: I'm still running into the issue below... Are you using a tarball as it was downloaded via https://github.com/ParaStation/psmpi/archive? Because it seems like the build procedure requires it's an actual git clone (not an exported version of the git tree). Any way around that?

== FAILED: Installation ended unsuccessfully (build directory:
... cmd " make install " exited with exitcode 2 and output:
No .git or .svn found
make -C mpich2 install

carsten-clauss · 2014-05-20T08:21:11Z

@boegel: Thank you for reviewing and pointing out this issue!
In fact, one of the install scripts tries to figure out the current version of psmpi2 by checking for local git or svn information -- of course without success.
Therefore, I have added a further patch that should fix this issue in the related script.

…pts, enforce non-parallel build

resolve version issue via creating of a VERSION file through premakeopts, enforce non-parallel build

boegel · 2014-05-20T15:39:48Z

Test report by @boegel
FAILED
Build succeeded for 2 out of 4
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/3d115409a91cbda1f793 for a full test report.

boegel · 2014-05-20T15:53:36Z

@carsten-clauss : ignore the build failures in the test report, the patch file is not being applied correctly because of a bug in the EasyBuild framework (see also #876 (comment))

I'll fix it and retest, this should be ready to go in now.

boegel · 2014-05-20T19:46:14Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/026d3615f088a82cf3d2 for a full test report.

boegel · 2014-05-20T19:55:58Z

depends on easybuilders/easybuild-framework#933

boegel · 2014-05-21T10:45:33Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4
Linux SL 6.5, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/1f47e1eee6de13a60013 for a full test report.

boegel · 2014-05-21T11:13:13Z

bug fix for git diff patch files has been merged, so this is ready to go in now (in time for EasyBuild v1.13)

Thanks @carsten-clauss!

add easyconfig files for ParaStation MPI

carsten-clauss · 2014-05-21T15:05:18Z

@boegel: Thank you very much!

fgeorgatos · 2014-11-26T21:41:04Z

Test report by @fgeorgatos
SUCCESS
Build succeeded for 4 out of 4
Linux debian 6.0.9, Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz, Python 2.6.6
See https://gist.github.com/b2bd10b23309229330f9 for a full test report.

add easyconfig files for ParaStation MPI

219ca61

fix dependency resolving for ParaStation (it seems that we need two s…

5e0c6b5

…eparated config folders for psmpi2 and pscom)

added -lpscom to configure so that mpicc works/links without stating …

d64e5f4

…it excplicitly

boegel reviewed Apr 2, 2014
View reviewed changes

Changes according to the remarks upon the pull request

daac9d5

boegel mentioned this pull request May 16, 2014

UTF8 coding issue with debug log message hpcugent/vsc-base#120

Closed

boegel added 3 commits May 16, 2014 21:07

add missing popt dependency for pscom

a6bdf55

make psmpi2 patch file more generic

19313e7

rename psmpi2 patch file, style cleanup in psmpi2 easyconfigs

f1ce2b7

boegel mentioned this pull request May 17, 2014

add missing popt dependency for pscomp, fix psmpi2 patch file, style fixes carsten-clauss/easybuild-easyconfigs#1

Merged

Merge pull request #1 from boegel/parastation_configs

cedf1e2

add missing popt dependency for pscomp, fix psmpi2 patch file, style fixes

carsten-clauss added 2 commits May 20, 2014 09:44

Fix libpopt library path for openSUSE.

5dd3457

Add patch for missing version information.

bde0953

boegel and others added 2 commits May 20, 2014 14:06

resolve version issue via creating of a VERSION file through premakeo…

3c57b1d

…pts, enforce non-parallel build

Merge pull request #2 from boegel/parastation_configs

8fa0891

resolve version issue via creating of a VERSION file through premakeopts, enforce non-parallel build

boegel mentioned this pull request May 20, 2014

fixed OpenBLAS-0.2.6_Makefile-LAPACK-sources.patch so it works in debian7 #876

Closed

boegel mentioned this pull request May 21, 2014

fix UTF8 escaping of log messages, retain newlines and tabs stdweird/easybuild-framework#28

Closed

boegel added a commit that referenced this pull request May 21, 2014

Merge pull request #759 from carsten-clauss/parastation_configs

3da35e1

add easyconfig files for ParaStation MPI

boegel merged commit 3da35e1 into easybuilders:develop May 21, 2014

carsten-clauss deleted the parastation_configs branch May 21, 2014 15:13

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