Skip to content

{bio}[GCC/8.2.0] Unicycler v0.4.7, Bowtie2 v2.3.5.1, SAMtools v1.9, SPAdes v3.13.1 w/ Python 3.7.2#8376

Merged
boegel merged 2 commits intoeasybuilders:developfrom
smoors:20190523222952_new_pr_Unicycler047
Jun 3, 2019
Merged

{bio}[GCC/8.2.0] Unicycler v0.4.7, Bowtie2 v2.3.5.1, SAMtools v1.9, SPAdes v3.13.1 w/ Python 3.7.2#8376
boegel merged 2 commits intoeasybuilders:developfrom
smoors:20190523222952_new_pr_Unicycler047

Conversation

@smoors
Copy link
Copy Markdown
Contributor

@smoors smoors commented May 23, 2019 •
edited by boegel
Loading

(created using eb --new-pr)
depends on #8375

adding easyconfigs: Unicycler-0.4.7-foss-2019a-Python-3.7.2.eb, Bowti…
f60e2c8 
…e2-2.3.5.1-GCCcore-8.2.0.eb, SAMtools-1.9-GCCcore-8.2.0.eb, SPAdes-3.13.1-GCCcore-8.2.0.eb
@smoors
Copy link
Copy Markdown
Contributor Author

smoors commented May 28, 2019

closing and reopening to trigger travis

@smoors smoors closed this May 28, 2019
@smoors smoors reopened this May 28, 2019
@easybuilders easybuilders deleted a comment from boegelbot May 28, 2019
boegel
boegel previously requested changes May 28, 2019
View reviewed changes
Copy link
Copy Markdown
Member

@boegel boegel left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@smoors Since the compiler being used to build Bowtie2, SAMtools and SPAdes, we should use the GCC toolchain for these (so we can have an alternative using the iccifort toolchain when the need arises)?

@boegel boegel added this to the 3.x milestone May 28, 2019
@smoors smoors requested a review from boegel May 29, 2019 15:59
@smoors smoors dismissed boegel’s stale review May 30, 2019 09:42

comment addressed

@smoors
Copy link
Copy Markdown
Contributor Author

smoors commented May 30, 2019

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic412 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/d897c68e9566f6ff1e915d75f321516d for a full test report.

@boegel boegel changed the title {bio}[GCCcore/8.2.0] Unicycler v0.4.7, Bowtie2 v2.3.5.1, SAMtools v1.9, ... w/ Python 3.7.2 {bio}[GCC/8.2.0] Unicycler v0.4.7, Bowtie2 v2.3.5.1, SAMtools v1.9, SPAdes v3.13.1 w/ Python 3.7.2 Jun 3, 2019
boegel
boegel approved these changes Jun 3, 2019
View reviewed changes
Copy link
Copy Markdown
Member

@boegel boegel left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm

@boegel boegel modified the milestones: 3.x, next release (3.9.2) Jun 3, 2019
@boegel
Copy link
Copy Markdown
Member

boegel commented Jun 3, 2019

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2658.swalot.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/107cdfa75a007f0a50d83526555952f8 for a full test report.

@boegel
Copy link
Copy Markdown
Member

boegel commented Jun 3, 2019

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2053.delcatty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/32543e33e8de18c38441f2226072282c for a full test report.

@boegel
Copy link
Copy Markdown
Member

boegel commented Jun 3, 2019

Test report by @boegel
SUCCESS
Build succeeded for 8 out of 8 (4 easyconfigs in this PR)
node3124.skitty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/b8eb655ab89439d3365627033a134bc6 for a full test report.

@boegel
Copy link
Copy Markdown
Member

boegel commented Jun 3, 2019

Going in, thanks @smoors!

@boegel boegel merged commit 9b8df51 into easybuilders:develop Jun 3, 2019
@smoors smoors deleted the 20190523222952_new_pr_Unicycler047 branch January 27, 2020 09:18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@boegel boegel boegel approved these changes

Assignees

No one assigned

Labels

new update

Projects

None yet

Milestone

3.9.2

Development

Successfully merging this pull request may close these issues.

2 participants

@smoors @boegel