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{bio}[GCC/8.2.0-2.31.1] pasta v1.8.5 w/ Python 3.7.2#9348

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boegel merged 5 commits intoeasybuilders:developfrom
omula:20191121113549_new_pr_pasta185
Nov 26, 2019
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{bio}[GCC/8.2.0-2.31.1] pasta v1.8.5 w/ Python 3.7.2#9348
boegel merged 5 commits intoeasybuilders:developfrom
omula:20191121113549_new_pr_pasta185

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@omula omula commented Nov 21, 2019

(created using eb --new-pr)

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@boegel boegel added the new label Nov 21, 2019
@boegel boegel added this to the 4.x milestone Nov 21, 2019
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omula commented Nov 22, 2019

Looking at the Dockerfile seems that all commands should be run in %(installdir)s.

Also, the prefix seems to be ignore as it starts creating symlinks on the %(builddir)s

== 2019-11-22 09:23:22,881 run.py:534 INFO cmd "mv /dev/shm/pasta/1.8.5/GCC-8.2.0-2.31.1/sate-tools-linux* ../sate-tools-linux &&  /beegfs/easybuild/CentOS/7.6.1810/Skylake/software/Python/3.7.2-GCCcore-8.2.0/bin/python setup.py develop --prefix=/beegfs/easybuild/CentOS/
7.6.1810/Skylake/software/pasta/1.8.5-GCC-8.2.0-2.31.1 --prefix /beegfs/easybuild/CentOS/7.6.1810/Skylake/software/pasta/1.8.5-GCC-8.2.0-2.31.1" exited with exit code 0 and output:

Creating link: '/dev/shm/pasta/1.8.5/GCC-8.2.0-2.31.1/pasta-926a4eb7baf5981b54ebcc7835fdd0ae1066096d/resources/scripts/hmmeralign' => '/dev/shm/pasta/1.8.5/GCC-8.2.0-2.31.1/pasta-926a4eb7baf5981b54ebcc7835fdd0ae1066096d/bin/hmmeralign'

Creating link: '/dev/shm/pasta/1.8.5/GCC-8.2.0-2.31.1/sate-tools-linux/raxmlp' => '/dev/shm/pasta/1.8.5/GCC-8.2.0-2.31.1/pasta-926a4eb7baf5981b54ebcc7835fdd0ae1066096d/bin/raxmlp'

Shall I change easyblock to Binary?

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boegel commented Nov 25, 2019

Looking at the Dockerfile seems that all commands should be run in %(installdir)s.

@omula Sounds like you need this in the easyconfig:

buildininstalldir = True

@omula omula changed the title {bio}[GCC/8.2.0-2.31.1] pasta v1.8.5 w/ Python 2.7.15 + 3.7.2 {bio}[GCC/8.2.0-2.31.1] pasta v1.8.5 w/ Python 3.7.2 Nov 25, 2019
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boegel commented Nov 26, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
generoso - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/319296d519008352274863a6202b69ea for a full test report.

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boegel commented Nov 26, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3295.victini.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/c7aa433d48a6a648ee6a2b20b7666063 for a full test report.

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boegel commented Nov 26, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2419.golett.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 2.7.5
See https://gist.github.com/0a88cc3156ecdc43d941380a268fa1ad for a full test report.

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boegel commented Nov 26, 2019

Going in, thanks @omula!

@boegel boegel merged commit ee1d09f into easybuilders:develop Nov 26, 2019
@boegel boegel modified the milestones: 4.x, 4.1.0 Nov 26, 2019
@omula omula deleted the 20191121113549_new_pr_pasta185 branch November 26, 2019 15:49
@omula omula mentioned this pull request Nov 29, 2019
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