{data}[GCCcore/8.3.0] Globus-CLI v1.11.0 w/ Python 2.7.16 + 3.7.4 by branfosj · Pull Request #9565 · easybuilders/easybuild-easyconfigs

branfosj · 2019-12-20T14:20:51Z

(created using eb --new-pr)

branfosj · 2019-12-20T14:23:46Z

I have not multi_deps this, as if you do this to test the main Globus CLI tool:

module load Python/3.7.4-GCCcore-8.3.0
module load Globus-CLI/1.11.0-GCCcore-8.3.0
globus --help

you get an error of:

Traceback (most recent call last):
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/bin/globus", line 6, in <module>
    from globus_cli import main
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/__init__.py", line 1, in <module>
    from globus_cli.commands import main
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/commands/__init__.py", line 1, in <module>
    from globus_cli.commands.main import main
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/commands/main.py", line 1, in <module>
    from globus_cli.commands.bookmark import bookmark_command
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/commands/bookmark/__init__.py", line 1, in <module>
    from globus_cli.commands.bookmark.commands import bookmark_command
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/commands/bookmark/commands.py", line 1, in <module>
    from globus_cli.commands.bookmark.create import bookmark_create
  File "/rds/bear-apps/devel/2019b/branfosj-eb-2/EL7/EL7-cascadelake/software/Globus-CLI/1.11.0-GCCcore-8.3.0/lib/python2.7/site-packages/globus_cli/commands/bookmark/create.py", line 1, in <module>
    import click
ImportError: No module named click

branfosj · 2019-12-20T14:26:43Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bear-pg0305u15a.bear.cluster - Linux RHEL 7.6, 8335-GTX, Python 2.7.5
See https://gist.github.com/cbff2889e06349423f3bc91641f23901 for a full test report.

branfosj · 2019-12-20T14:26:48Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bear-pg0211u03a.bear.cluster - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz, Python 2.7.5
See https://gist.github.com/942f3197db493c31dea497d546c81561 for a full test report.

branfosj · 2019-12-20T14:51:57Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bber0501u03a.bb2.cluster - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/d7c468e9e003396ab8f8595eb840ce6c for a full test report.

branfosj · 2019-12-20T14:56:53Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bb2c1a10.bb2.cluster - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/a4992314d2c39ec21ef1b8b5fada09cd for a full test report.

smoors

@branfosj the Click extension was added only recently to the Python modules, that's probably the reason for the error you're seeing.

branfosj · 2019-12-20T20:43:08Z

I've rebuilt both Python 2.7.16 and 3.7.4 with the latest from the develop branch. I then tested:

If I change this easyconfig to Python 2.7.16 then it works fine
If I use multi_deps (Python 3.7.4 and 2.7.16) then it fails with the error message as above
If I use multi_deps (Python 3.7.4 and 2.7.16) and and a Click install in this easyconfig then it also fails, but on ImportError: No module named cryptography.

It seems that something about multi_deps and this do not agree.

smoors · 2019-12-21T10:55:57Z

@branfosj the problem is with the shebang in the python executable, which has the python version hardcoded. you can fix this with:

fix_python_shebang_for = ['bin/globus', 'bin/jp.py', 'bin/pyjwt']

please also add:

sanity_check_commands = ['globus --help']

branfosj · 2019-12-21T11:12:39Z

Ah yes. Thanks for the pointer. I've updated the file as requested and test reports will show up soon.

branfosj · 2019-12-21T11:13:17Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bb-pg-login02 - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz, Python 2.7.5
See https://gist.github.com/c71509119deafedc580fee4f24344d59 for a full test report.

branfosj · 2019-12-21T11:15:32Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bear-pg0211u03a.bear.cluster - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz, Python 2.7.5
See https://gist.github.com/9986cf7d1d8d6426c46633a7100f4b49 for a full test report.

branfosj · 2019-12-21T11:15:45Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bear-pg0305u05a.bear.cluster - Linux RHEL 7.6, 8335-GTX, Python 2.7.5
See https://gist.github.com/9c4b3d2eb13e82c3a3c182c448e59703 for a full test report.

branfosj · 2019-12-21T11:20:56Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
bb2c1a09.bb2.cluster - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz, Python 2.7.5
See https://gist.github.com/8c9cca47abc65e06a0487698d59cda01 for a full test report.

boegel

lgtm

boegel · 2019-12-21T12:58:59Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2405.golett.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 2.7.5
See https://gist.github.com/ce96ac037012205086c822a1302ad4d1 for a full test report.

boegel · 2019-12-21T12:59:13Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
generoso - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/83b25c0e1aaf9bd17cf8fdebb8d8377b for a full test report.

boegel · 2019-12-21T13:00:04Z

Going in, thanks @branfosj!

requested changes made

boegel · 2019-12-21T13:01:08Z

Going in, thanks @branfosj!

boegel · 2019-12-21T13:01:22Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3100.skitty.os - Linux centos linux 7.7.1908, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/1be2ce989570c5fb84b66f8c0dd7b94d for a full test report.

adding easyconfigs: Globus-CLI-1.11.0-GCCcore-8.3.0-Python-3.7.4.eb

d08d9d6

smoors previously requested changes Dec 20, 2019

View reviewed changes

add a sanity check command

b908e56

change to multi_deps and fix the hardcoded shebang lines

39697ea

branfosj changed the title ~~{data}[GCCcore/8.3.0] Globus-CLI v1.11.0 w/ Python 3.7.4~~ {data}[GCCcore/8.3.0] Globus-CLI v1.11.0 w/ Python 2.7.16 + 3.7.4 Dec 21, 2019

boegel added this to the release after 4.1.0 (4.1.1?) milestone Dec 21, 2019

boegel added the new label Dec 21, 2019

boegel approved these changes Dec 21, 2019

View reviewed changes

boegel merged commit 58441de into easybuilders:develop Dec 21, 2019

branfosj deleted the 20191220142045_new_pr_Globus-CLI1110 branch December 28, 2019 20:23

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