define alias for the modulefile in your easyconfigs#952
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boegel merged 8 commits intoeasybuilders:developfrom Jul 8, 2014
Merged
define alias for the modulefile in your easyconfigs#952boegel merged 8 commits intoeasybuilders:developfrom
boegel merged 8 commits intoeasybuilders:developfrom
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hmm, maybe modextra_aliases is better? plural, but also avoid the double a to make it more readable (although that doesn't match the modextrafoo pattern that was being used for the others
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@pescobar: you'll need to update the SHA1's in the The best way to do that is to run it, see what the correct sha1 is, replace the old one, run again. Until you're replaced all of them. This happens every time a new easyconfig parameter is added, because of the rather weird unit test for custom module naming schemes. |
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test this please |
rename modextraalias to modaliases
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@pescobar: looks great, merging in, thanks! |
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define alias for the modulefile in your easyconfigs
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first working version. It needs more testing
with this you can add this to your easyconfigs
and the alias will be added in the generated modulefile
set-alias gatk "java -jar $root/gatk.jar"