• scoping_data_extraction_20240412.csv: Raw meta-analysis data from retained studies, which forms the basis of tableS1
• non_standardised_data_20230112.csv: Raw meta-analysis data from studies that were not temporally standardised
• op_interaction.RData: Meta-analysis data as an RData file
• survey_data_July2022.RData: Old meta-anaylsis data from non-standardised studies, still used for study type naming.
• study_names_unicode_20221122.csv: Meta-analysis author names in unicode format for accents
• study_names_unicode_20221121.csv: Meta-analysis author names in unicode format for accents (old version but still used for some studies)
• pinnrev_sf.RData: Spatial sf data from retained studies
• pinnrev_centroid_data.RData: Spatial data from retained studies, where lat-lon centroids are specified rather than full polygon geometries.
• potential_pinniped_conflict_allpin.tif: Raster tif data for the potential for fishery-pinniped interactions, with all layers included
• potential_pinniped_conflict_nogfw.tif: Raster tif data for the potential for fishery-pinniped interactions, excluding Global Fishing Watch data for fishing effort from Kroodsma et al.
• potential_pinniped_conflict_noshore.tif: Raster tif data for the potential for fishery-pinniped interactions, excluding data on distance from shore

• spaial_conflict_potential.R: Creating index of potential for pinniped-fishery interactions from spatial layers.
• wrangling_coordinates.R: Extracting spatial information from retained studies.
• meta_data_names.R: Adjusting author names
• iucn_wrangle.R: IUCN occurence fata for pinniped species globally
• gfw_wrangling.R: Preparation of Global Fishing Watch data on fishing effort from Kroodsma et al.
• raster_aggregation.R: Aggregating raster data of distance to shore into correct format
• raster_layer_preparation.R: Bringing together raster layers for spatial conflict potential and ensuring spatial overlap is correct etc.

• meta_analysis_2024.R: Main meta-analysis script for study.
• non_standardised_data_analysis.R: Explorative analysis of studies that were not temporally standardized.
• spatial_conflict_pontential_analysis.R: Additional analysis of spatial conflict potential including overlap with retained studies.
• underlying_raster_plots.R: Spatial plotting of individual raster layers in the conflict potential index.
• old/: Contains initial iterations of scripts

Figures from analysis.

R version 4.4.0 (2024-04-24) Platform: aarch64-apple-darwin20 Running under: macOS Sonoma 14.4

other attached packages:

other attached packages: [1] metafor_4.6-0 numDeriv_2016.8-1.1 Matrix_1.7-0 meta_7.0-0
[5] metadat_1.2-0 flextable_0.9.6 rasterize_0.1 sf_1.0-16
[9] MetBrewer_0.2.0 terra_1.7-78 raster_3.6-26 sp_2.1-4
[13] patchwork_1.2.0 lubridate_1.9.3 forcats_1.0.0 stringr_1.5.1
[17] dplyr_1.1.4 purrr_1.0.2 readr_2.1.5 tidyr_1.3.1
[21] tibble_3.2.1 ggplot2_3.5.1 tidyverse_2.0.0

loaded via a namespace (and not attached): [1] tidyselect_1.2.1 fastmap_1.2.0 CompQuadForm_1.4.3
[4] fontquiver_0.2.1 mathjaxr_1.6-0 promises_1.3.0
[7] digest_0.6.35 timechange_0.3.0 mime_0.12
[10] lifecycle_1.0.4 gfonts_0.2.0 magrittr_2.0.3
[13] compiler_4.4.0 rlang_1.1.3 tools_4.4.0
[16] utf8_1.2.4 data.table_1.15.4 knitr_1.47
[19] askpass_1.2.0 classInt_0.4-10 curl_5.2.1
[22] xml2_1.3.6 KernSmooth_2.23-22 httpcode_0.3.0
[25] withr_3.0.0 fansi_1.0.6 gdtools_0.3.7
[28] xtable_1.8-4 e1071_1.7-14 colorspace_2.1-0
[31] MASS_7.3-60.2 scales_1.3.0 crul_1.4.2
[34] cli_3.6.2 rmarkdown_2.27 crayon_1.5.2
[37] ragg_1.3.2 generics_0.1.3 rstudioapi_0.16.0
[40] tzdb_0.4.0 minqa_1.2.7 DBI_1.2.2
[43] proxy_0.4-27 splines_4.4.0 vctrs_0.6.5
[46] boot_1.3-30 jsonlite_1.8.8 fontBitstreamVera_0.1.1 [49] hms_1.1.3 systemfonts_1.1.0 units_0.8-5
[52] glue_1.7.0 nloptr_2.1.1 codetools_0.2-20
[55] stringi_1.8.4 gtable_0.3.5 later_1.3.2
[58] lme4_1.1-35.4 munsell_0.5.1 pillar_1.9.0
[61] htmltools_0.5.8.1 openssl_2.2.0 R6_2.5.1
[64] textshaping_0.4.0 evaluate_0.23 shiny_1.8.1.1
[67] lattice_0.22-6 png_0.1-8 fontLiberation_0.1.0
[70] httpuv_1.6.15 class_7.3-22 Rcpp_1.0.12
[73] zip_2.3.1 uuid_1.2-0 nlme_3.1-164
[76] officer_0.6.6 xfun_0.44 pkgconfig_2.0.3