Here are my bioinformatic mini-projects and implementations of some common algorithms that I wrote during my Bsc and Msc studies (2012-2014), including:
| Project | Folder | Link |
|---|---|---|
| 1. Replica exchange Monte Carlo algorithms for protein folding | Molecular_Dynamics | 🔗 Link |
| 2. Regulatory region discovery using overrepresented motifs with binomial distribution and Ensembl public MySQL Servers | bio_motif_ensembl | 🔗 Link |
| 3. Genome assembly using de Bruijn Graph implementation with Eulerian walk-finder | genome_assembly | 🔗 Link |
| 4. Implementation of the Felsenstein's tree-pruning and the Nearest-Neighbor Interchange (NNI) algorithms for computing the likelihood of an evolutionary tree from nucleic acid sequence data | comparative_genomics | 🔗 Link |
| 5. A Galaxy workflow that automates mRNA annotation and contamination filtering using BLAST | mRNA_Markup | 🔗 Link |