Tags: nextgenusfs/gfftk
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Fix phase field initialization for ncRNA genes without CDS When parsing genes with mRNA/transcript type but no CDS features (ncRNA), the phase field was not being appended to the results dictionary, causing a length mismatch error in validate_models(). This fix adds results['phase'].append([]) for ncRNA genes to match the pattern used for other gene types, ensuring all required fields have consistent lengths. Fixes 5 failing tests related to parsing genes without CDS features.
Fix phase field initialization for ncRNA genes without CDS When parsing genes with mRNA/transcript type but no CDS features (ncRNA), the phase field was not being appended to the results dictionary, causing a length mismatch error in validate_models(). This fix adds results['phase'].append([]) for ncRNA genes to match the pattern used for other gene types, ensuring all required fields have consistent lengths. Fixes 5 failing tests related to parsing genes without CDS features.
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