Repositories list

• ngs-taxon

  Public
  Ancient Environmental DNA taxonomy assignment workflow module

  snakemakengsedna+ 1

  snakemakengsednataxonomic-assignment

  Python

  •00 forks•00 stars•00 issues•22 pull requests•Updated Apr 17, 2026Apr 17, 2026

• ngs-derep

  Public
  Ancient Environmental DNA dereplication workflow module

  snakemakengsedna+ 1

  snakemakengsednadereplication

  Python

  •00 forks•00 stars•00 issues•22 pull requests•Updated Apr 16, 2026Apr 16, 2026

• seqcenter

  Public
  Scripts for the Sequencing Center

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• 2025-kapk-microbial

  Public
  This repository contains the complete analysis pipeline and downstream analysis code for processing and analyzing environmental ancient DNA (aDNA) from Kap Købe…

  Python

  •00 forks•22 stars•11 issue•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• onebam

  Public
  ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything

  C

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• ngs-trim

  Public
  Ancient Environmental DNA trimming workflow module

  snakemakengsedna+ 1

  snakemakengsednatrimming-bases

  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Mar 27, 2026Mar 27, 2026

• NBIB25004U-Metagenomics-2026

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• unicorn

  Public
  Tool repositiory for bam files

  metagenomicsenvironmental-dnaadna+ 2

  metagenomicsenvironmental-dnaadnadna-sequencinghigh-performance-sequencing

  C

  •

  MIT License

  •11 fork•77 stars•44 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• aeDNA

  Public
  Python

  •00 forks•44 stars•00 issues•22 pull requests•Updated Mar 17, 2026Mar 17, 2026

• MultiQC

  Public
  Aggregate results from bioinformatics analyses across many samples into a single report.

  JavaScript

  •

  GNU General Public License v3.0

  •656656 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• Tjornin_Butterfly

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 30, 2025Oct 30, 2025

• LakeTjornin

  Public
  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• geogenetics-public

  Public
  Public GeoGenetics resources

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2025Oct 1, 2025

• aeGenomicsCourse2025

  Public
  This repo is the a course homepage for a PhD course in ancient environmental genomics

  00 forks•77 stars•00 issues•00 pull requests•Updated Sep 21, 2025Sep 21, 2025

• ONEcode

  Public
  1-code framework: docs, C-library, and tools

  C

  •

  Other

  •66 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2025Sep 12, 2025

• data-analysis-2025

  Public
  Jupyter Notebook

  •00 forks•33 stars•00 issues•00 pull requests•Updated Mar 14, 2025Mar 14, 2025

• bwa

  Public
  Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)

  environmental-dnaancient-dnashort-read-mapping

  environmental-dnaancient-dnashort-read-mapping

  C

  •

  GNU General Public License v3.0

  •577577 forks•00 stars•00 issues•00 pull requests•Updated Nov 15, 2024Nov 15, 2024

• aeGenomicsCourse2024

  Public
  Smarty

  •

  MIT License

  •11 fork•44 stars•00 issues•00 pull requests•Updated Sep 25, 2024Sep 25, 2024

• aeGenomicsCourse2023

  Public
  Smarty

  •44 forks•44 stars•00 issues•00 pull requests•Updated Sep 5, 2024Sep 5, 2024

• data-analysis-2024

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 7, 2024Jun 7, 2024

• aeDNA_Journal_Club

  Public
  This is the homepage for the Ancient Environmental DNA Journal Club

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 22, 2024Mar 22, 2024