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@GooglingTheCancerGenome Googling the cancer genome

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    10 repositories

    • sv-callers

      Public
      Snakemake-based workflow for detecting structural variants in genomic data
      workflowbioinformaticssnakemake
      workflowbioinformaticssnakemakesomatic-variantscancer-genomicswgshpc-applicationsgermline-variantsstructural-variantssv-calling
      Python
      •
      Apache License 2.0
      •36•82•7•1•Updated Feb 14, 2025Feb 14, 2025

    • sv-gen

      Public
      Snakemake-based workflow for generating artificial genomes with structural variants
      workflowbioinformaticssnakemake
      workflowbioinformaticssnakemakesimulatorcancer-genomicswgshpc-applicationsstructural-variants
      Python
      •
      Apache License 2.0
      •1•7•1•0•Updated Feb 14, 2025Feb 14, 2025

    • docker-images

      Public
      Docker images for CI testing
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • sv-channels

      Public
      Deep learning-based structural variant filtering method
      Python
      •
      Apache License 2.0
      •6•39•21•2•Updated Nov 19, 2023Nov 19, 2023

    • notebooks

      Public
      This repo mirrors the Jupyter Notebooks archived at Zenodo
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•1•0•Updated Aug 26, 2020Aug 26, 2020

    • breakpoint-pairs

      Public
      Minor research internship of Sarah Mehrem.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • bamsurgeon

      Public
      tools for adding mutations to existing .bam files, used for testing mutation callers
      Python
      •
      MIT License
      •85•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • sv-report

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jan 26, 2018Jan 26, 2018

    • hsv-ld

      Public
      Linked Data Platform for Structural Variants in Human Cancer Genomes
      Shell
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 1, 2017Dec 1, 2017

    • ga-integr8

      Public
      Genome Annotation Data Integration
      Python
      •0•0•2•0•Updated Nov 29, 2017Nov 29, 2017
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