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    40 repositories

    • RW-2-BIO

      Public
      R
      •2•0•1•0•Updated Apr 8, 2026Apr 8, 2026

    • historic-modern-environment

      Public
      Environmental variables from historic and modern periods at the point and 8 km spatial resolutions
      R
      •
      MIT License
      •2•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • npp

      Public
      statistical modeling of tree rings to estimate biomass increment
      R
      •2•4•1•0•Updated Nov 1, 2023Nov 1, 2023

    • PalEON_MIP_ORNL_DAAC

      Public
      Scripts for Converting PalEON MIP output for ORNL DAAC
      Shell
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • linkages_package

      Public
      This repository holds fortan and R versions of version 1 of forest gap model LINKAGES (Pastor and Post 1983).
      Fortran
      •12•1•0•0•Updated May 30, 2023May 30, 2023

    • Bias-Estimation-Forest-Density

      Public
      Surveyor and analyst biases in the estimation of forest density from historical United States Public Land Surveys
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 27, 2023Apr 27, 2023

    • pecan

      Public
      The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
      R
      •
      Other
      •308•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • composition-eastern-moretaxa

      Public
      Code for fitting the eastern PLS composition model to additional taxa
      R
      •0•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • ReFAB

      Public
      Reconstructing Forest Aboveground Biomass (ReFAB) is a codebase for reconstructing aboveground woody biomass from fossil pollen.
      R
      •0•4•0•0•Updated Apr 20, 2022Apr 20, 2022

    • RW-2-BIO-DEP

      Public
      R
      •2•0•0•0•Updated Feb 2, 2021Feb 2, 2021

    • EcosystemVariability

      Public
      Model-Data comparisons of ecosystem stability across space and time
      R
      •1•1•3•0•Updated Dec 7, 2020Dec 7, 2020

    • modeling_met_ensemble

      Public
      Generation of downscaled met driver ensemble for uncertainty analysis and data assimilation
      R
      •2•0•3•0•Updated Nov 6, 2020Nov 6, 2020

    • met_ensemble_paper

      Public
      Repository for analyses associated with the manuscript that will accompany the paper on the met downscaling
      R
      •0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

    • env_regional

      Public
      Processing scripts & provenance for generation of PalEON MIP Regional Runs (MIP Phase 2).
      R
      •0•1•0•0•Updated Apr 20, 2020Apr 20, 2020

    • fading-record

      Public
      Test of the fading record correction using the FIA stem density versus mean stand diameter phase space diagram.
      HTML
      •1•0•0•0•Updated Mar 9, 2020Mar 9, 2020

    • PLS_products

      Public
      Produces gridded biomass, density, etc. products from point-level PLS data from Upper Midwest, southern Michigan, Indiana, Illinois.
      R
      •2•1•3•0•Updated Feb 20, 2020Feb 20, 2020

    • FIA_products

      Public
      Produces gridded biomass, density, etc. products from plot-level FIA data from PalEON domain.
      R
      •0•0•1•0•Updated Jan 18, 2020Jan 18, 2020

    • composition_paper

      Public
      materials for paper on statistical settlement vegetation composition product
      TeX
      •0•0•0•0•Updated Jan 6, 2020Jan 6, 2020

    • stepps-baconizing

      Public
      Data, code, and output from the Bacon age-depth models developed for use in the STEPPS prediction runs.
      HTML
      •0•1•8•0•Updated Nov 15, 2019Nov 15, 2019

    • PalEON-soils

      Public
      Repository for aggregation of soils data across the PalEON domain
      Python
      •0•0•1•0•Updated Sep 27, 2019Sep 27, 2019

    • IN_ILTownshipChecker

      Public
      Notre Dame's R code to run QA/QC on Indiana and Illinois PLS data
      R
      •0•0•0•0•Updated Aug 5, 2019Aug 5, 2019

    • STEPPS-prediction-Ecology

      Public
      This repository contains the code that accompanies the publication titled "Quantifying trends and uncertainty in prehistoric forest composition in the Upper Mid…
      R
      •
      MIT License
      •2•1•0•0•Updated Jul 24, 2019Jul 24, 2019

    • YellowRiver_Indiana

      Public
      Caitlin Broderick's analyses comparing historical (PLS) and modern forest structure and composition in the Yellow River watershed, Indiana.
      R
      •
      MIT License
      •1•1•0•0•Updated May 16, 2018May 16, 2018

    • stepps-cal

      Public
      A repository for the R package intended to carry out STEPPS calibration.
      calibrationr-packagereconstruction
      calibrationr-packagereconstructionpaleoecologyneotoma-database
      R
      •
      Other
      •5•0•3•0•Updated Apr 21, 2018Apr 21, 2018

    • stepps-calibration

      Public
      STEPPS pollen-veg calibration model code and paper.
      R
      •1•0•6•0•Updated Apr 13, 2018Apr 13, 2018

    • Plotless_Density_Estimators

      Public
      Tree patterns were simulated from known spatial point processes and sampled in R.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2018Mar 15, 2018

    • biomass_product_paper

      Public
      Repository for product-focused paper on FIA and PLS biomass
      TeX
      •0•0•0•0•Updated Feb 10, 2018Feb 10, 2018

    • PalEON-FIA

      Public
      Code to take the FIA composition, density, and biomass data and aggregate it to the PalEON grid
      R
      •3•0•7•0•Updated Dec 14, 2017Dec 14, 2017

    • PalEON_MIP2_Region

      Public
      General scripts for accessing & synthesizing ecosystem model output from the PalEON Regional MIP
      R
      •1•0•0•1•Updated Aug 14, 2017Aug 14, 2017

    • Temporal-Scaling-MS

      Public
      MIP paper looking differences drivers of ecosystem variation among models and temporal scales
      R
      •0•0•1•0•Updated Jun 18, 2017Jun 18, 2017
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