Repositories list

• pyeed

  Public
  🧬 Toolkit to create, annotate, and analyze specialized sequence databases

  bioinformatics

  bioinformatics

  Python

  •

  MIT License

  •66 forks•55 stars•1919 issues•11 pull request•Updated Dec 21, 2025Dec 21, 2025

• TEM-lactamase

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 15, 2025Aug 15, 2025

• structure-align

  Public
  Tool to align protein structures with differing lengths

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 15, 2025Jun 15, 2025

• TemStaProTesting

  Public
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.

  Jupyter Notebook

  •

  MIT License

  •1818 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2025Jun 4, 2025

• CANDy

  Public
  CANDy allows the domain detection and annotation of protein sequences from any CAZy family.

  Jupyter Notebook

  •11 fork•22 stars•00 issues•11 pull request•Updated Apr 14, 2025Apr 14, 2025

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2025Apr 9, 2025

• aligner

  Public
  Rust

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2025Apr 3, 2025

• PyEED_JupyterLab

  Public
  🐳 Docker image with JupyterLab and pyeed

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 16, 2025Jan 16, 2025

• PHA-Depolymerases

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2025Jan 5, 2025

• data-models

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 28, 2024Jun 28, 2024

• prototyping

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 14, 2024Jun 14, 2024

• colab-example

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 27, 2024Feb 27, 2024

• LED-DB

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2023Nov 14, 2023

• TEMdatabase

  Public
  TEM adaptive database for a personal update and discovery on new TEM beta lactamases

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 26, 2023Jun 26, 2023

• PyEED-jupyternotebook

  Public
  Jupyter notebook datamodel

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 1, 2023Feb 1, 2023

• PAZy

  Public
  Reading in data from PAZy using the pyeed-data-model

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 17, 2023Jan 17, 2023

• sdrdm-template

  Public template
  Python

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2022Aug 29, 2022