Skip to content

@SizunJiangLab SizunJiangLab

Change the repository type filter

All

    Repositories list

    14 repositories

    • IN-DEPTH

      Public
      Code for IN-DEPTH
      dlbclspatial-proteomicsebv
      dlbclspatial-proteomicsebvmulti-omicsspatial-transcriptomicstumor-microenvironmentsgccspatial-omics
      HTML
      •
      Other
      •1•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • Benchmarking_tissue_preparation

      Public
      Large-scale Quantitative Assessment of Tissue Preparation and Staining Conditions for Robust Multiplexed Imaging
      Jupyter Notebook
      •
      MIT License
      •1•1•0•1•Updated Mar 24, 2026Mar 24, 2026

    • PASTA

      Public
      Analysis code for PASTA: Versatile Tyramide-oligonucleotide Amplification for Multi-modal Spatial Biology
      Python
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • Hodgkin_EBV_MIBI

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jan 30, 2026Jan 30, 2026

    • CRS

      Public
      Codes for analyzes in Distinct Immune and Epithelial Dysregulation in the Inflammatory Respiratory Nasal Tract
      Jupyter Notebook
      •1•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • Tutorials

      Public
      Tutorials for various analysis
      Jupyter Notebook
      •1•2•0•0•Updated Aug 29, 2025Aug 29, 2025

    • pycodex

      Public
      Co-detection by indexing (CODEX) analysis using Python
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 31, 2025May 31, 2025

    • backup_win

      Public
      Tools for backup
      Python
      •0•1•0•0•Updated Apr 26, 2025Apr 26, 2025

    • fusion_utils

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • pipeline

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • proseg_v1.1.7

      Public
      Probabilistic cell segmentation for in situ spatial transcriptomics
      Rust
      •
      Other
      •16•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • MCB-MIBI

      Public
      MATLAB
      •0•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • OME-TIFF_Generator

      Public
      Script to generate OME-TIFF
      Python
      •1•2•1•0•Updated Sep 21, 2023Sep 21, 2023

    • RAPID_processing_py

      Public
      A pipeline to run RAPID and generate a OMETiff for visualization
      Python
      •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.